Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2192 ATGAGCTCTCAGGTTTGCAGATCCGCTTCTAGAGCAGTGAGGTCCCTTCTCTCTGCTTCCAAGGGCTCTCGTTTTTACTCCGAAGGGCGCACTGTAGCTGCTGCTGCTGCTGTTGCATTTACAACTAAAGTGCCTCTTTTTGCCTCAAATTATGGCAGGGCCGATTCCGGAAGTGGACCCAGAGCATGGCTTTCAGGAGCTCTCGCTCTCCCTGCTGCAGCTTACATGCTCCAAGATCAGGAGGCACATGCTGCTGAGATGGAGCGCACTTTCATTGCCATTAAGCCGGACGGAGTGCAGAGGGGGCTGATTTCAGAGATTATATCCCGTTTTGAGCGGAAAGGGTTCAAACTTGTGGGAATTAAAATATTGGTTCCTTCAAAGGAATTTGCACAAAAGCATTATCATGACCTGAAGGAAAGACCCTTCTTCAATGGCTTGTGCGACTTTCTAAGCTCTGGCCCTGTTATTGGAATGGTGTGGGAAGGACAGGGAGTAATTTCCTATGGCCGAAAACTAATTGGAGCGACGGATCCACAGAAATCAGAGCCTGGAACTATTAGAGGTGATCTGGCTGTCGTTGTTGGAAGAAATATCATCCACGGGAGTGATGGTCCAGAGACTGCCCAGGACGAAATTAAGTTGTGGTTTAAGCCAGAAGAGTTGGTAAATTACACAAGCAACGCAGAGAGGTGGATTTATGGTGACAACTGA 714 0.4832 MSSQVCRSASRAVRSLLSASKGSRFYSEGRTVAAAAAVAFTTKVPLFASNYGRADSGSGPRAWLSGALALPAAAYMLQDQEAHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKILVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVIGMVWEGQGVISYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAQDEIKLWFKPEELVNYTSNAERWIYGDN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2192 237 Hamap Nucleoside diphosphate kinase [ndk]. 87 222 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Glsi05g2192 237 PRINTS Nucleoside diphosphate kinase signature 198 217 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Glsi05g2192 237 PRINTS Nucleoside diphosphate kinase signature 90 112 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Glsi05g2192 237 PRINTS Nucleoside diphosphate kinase signature 154 171 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Glsi05g2192 237 PRINTS Nucleoside diphosphate kinase signature 175 191 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Glsi05g2192 237 PRINTS Nucleoside diphosphate kinase signature 134 153 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Glsi05g2192 237 FunFam Nucleoside diphosphate kinase 83 235 - -
Glsi05g2192 237 CDD NDPk_I 88 217 - -
Glsi05g2192 237 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 79 235 - -
Glsi05g2192 237 SMART ndk_5 87 224 IPR034907 -
Glsi05g2192 237 Pfam Nucleoside diphosphate kinase 88 221 IPR034907 -
Glsi05g2192 237 SUPERFAMILY Nucleoside diphosphate kinase, NDK 87 234 IPR036850 -
Glsi05g2192 237 ProSitePatterns Nucleoside diphosphate kinases active site. 198 206 IPR023005 -
Glsi05g2192 237 Gene3D - 83 237 IPR036850 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2192 Glsi-ChrGlsi05 68223122 68227006 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2192 05 68223122 68227006 Glsi05g2192 05 68223122 68227006 ECH