Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2188 ATGGAAAAGCTTGTACAACTCATTTGCCTGTCTCCTGTTCTTCTGTTTCTGTGCCTACCTTCTGCTCTTGCTGTTCATGACTACGGCCAAGCTCTGAGTAAGAGCATTCTCTTCTTTGAAGCACAGAGATCTGGTTATCTTCCCCACAACCAGAGAGTAATATGGAGGGGTCATTCTGGTCTGCAAGACGGCAAGGCTAGCGGGGTAGATCTAGTTGGTGGGTACTATGATGCAGGGGACAATGTGAAGTTCGGGTTGCCCATGGCATTCACTGTTACAATGTTGTCATGGAGCATAATAGAGTATGGAAAGACAATGGCTGCAAGCGGTGAGCTTGGCCATGCCATGGAGGCTGTAAAGTGGGGTACTGACTACTTCATCAAAGCGCATCCCCAACCCAATGTTCTCTACGGAGAGGTGGGAGATGGTAACAGTGACCATTACTGCTGGCAAAGGCCAGAGGACATGACCACCGACCGCCGGGCTTACAAGATCGACCCGAGCAATCCTGGGTCGGATCTCGCTGGAGAAACGGCTGCCGCTATGGCTGCCGCATCCATTGTCTTCCGACACTCTAACCCTTCTTATGCCAGCGAGCTTCTCCGCCATGCTTACCAGCTATTTGACTTAGCGGACAAATACAGAGGCAAGTATGACGGCAGCATCACTGTAGCGCAAAAGTATTACCGATCCATCAGTGGCTACAATGACGAATTGCTCTGGGCTGCTGCATGGCTGTATCAAGCAAGCAACAATCAGTATTACCTTGATTACCTAGCCAGAAACGGTGATTCCATGGGTGGTACTGGTTGGTCCATGACTGAATTTGGTTGGGACGTCAAGTATGCTGGGGTCCAGACTTTGGTCGCCAAGTTCCTAATGCAAGGCAAAGCTGGTCATCATGCCCCAGTCTTTGAGAGGTTCCAGCAGAAGGCAGAGAATTTCATGTGTTCTTGCCTGGGAAAGGGCACTCGCAATGTTCAGAAGACTCCTGGTGGCCTCATCTTCCGCCAGAGATGGAACAATATGCAGTTTGTCACAAGTGCCGCCTTCTTAGCCACTGTCTACTCTGACTACCTCGCTTCTTCCGGTACATACTTGAGATGCCCTTCCGGCAATGTCCCTCCTGCTCAGCTTCTCTCCCTTGCTAAATCTCAGGTGGACTACATTCTTGGAGACAACCCAAGAGCCACCAGTTATATGGTGGGCTATGGAAGAACCTTCCCTCAAAGGGTTCACCACAGAGCTTCCTCAATTGTTTCCATCAAGGTTAATCCTACATTTGTCAGCTGCCGTGGAGGTTATGCGACTTGGTTTAGCAGGGAAGGAAGCGACCCCAATCTACTTGCTGGTGCTATTGTTGGTGGACCTGATGCTTATGACAACTTCGCTGATGAAAGAGATAACTACGAGCAAACAGAGCCAGCAACCTACAACAATGCTCCTCTTATTGGTATACTAGCACGACTCAGTGGTGGTCATAGTGGCTTTAACCAGCTCCTTCCAGTAGTTGTTCCAGTTCCTAAGCCTGTCGCCATCATTCCCCCACCAGCTCCCAAACCTAAGATTACTCCAGCTCCAGCTTCATCTTCAGGTCCAATATCTATTGAACAGAAGATGACGACTTCATGGGTTGCCAATGGAAGAACTTATTACAGGTACTCAGCAGTGGTGACTAACAAGTCTGCCAAGACTCTCAAGTCTCTTGAGCTATCAATATCGAAGCTTTATGGTCCAATATGGGGCCTGACAAAGTCAGGTGATTCCTACACTTGGCCATCATGGCTTAACTCTTTATCAGCAGGCAAGAGCCTTGAGTTTGTCTACATCCATTCTGCTTCTCCAGCAGACGTCTCTCTTGCGAACTACTTGTTGGTGTGA 1881 0.4907 MEKLVQLICLSPVLLFLCLPSALAVHDYGQALSKSILFFEAQRSGYLPHNQRVIWRGHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMLSWSIIEYGKTMAASGELGHAMEAVKWGTDYFIKAHPQPNVLYGEVGDGNSDHYCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRHSNPSYASELLRHAYQLFDLADKYRGKYDGSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLARNGDSMGGTGWSMTEFGWDVKYAGVQTLVAKFLMQGKAGHHAPVFERFQQKAENFMCSCLGKGTRNVQKTPGGLIFRQRWNNMQFVTSAAFLATVYSDYLASSGTYLRCPSGNVPPAQLLSLAKSQVDYILGDNPRATSYMVGYGRTFPQRVHHRASSIVSIKVNPTFVSCRGGYATWFSREGSDPNLLAGAIVGGPDAYDNFADERDNYEQTEPATYNNAPLIGILARLSGGHSGFNQLLPVVVPVPKPVAIIPPPAPKPKITPAPASSSGPISIEQKMTTSWVANGRTYYRYSAVVTNKSAKTLKSLELSISKLYGPIWGLTKSGDSYTWPSWLNSLSAGKSLEFVYIHSASPADVSLANYLLV 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2188 626 SMART CBM49_2 534 614 IPR019028 GO:0030246
Glsi05g2188 626 Gene3D - 24 493 IPR012341 GO:0005975
Glsi05g2188 626 FunFam Endoglucanase 24 495 - -
Glsi05g2188 626 Pfam Carbohydrate binding domain CBM49 534 611 IPR019028 GO:0030246
Glsi05g2188 626 SUPERFAMILY Six-hairpin glycosidases 26 502 IPR008928 GO:0005975
Glsi05g2188 626 Pfam Glycosyl hydrolase family 9 28 487 IPR001701 GO:0004553|GO:0005975
Glsi05g2188 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
Glsi05g2188 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 463 481 IPR033126 -
Glsi05g2188 626 PANTHER ENDO-1,4-BETA-GLUCANASE 17 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2188 Glsi-ChrGlsi05 68190868 68194509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g2188 18 625 Glycoside Hydrolase AT1G64390 78.289 0.0 1008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2188 05 68190868 68194509 Glsi05g2188 05 68190868 68194509 ECH