Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2172 ATGATTGTCTTACATCAAGTTCGAGTCAGATTTAATGAAATTGAGCAAGCTAGAGGGATATTTGAGCGATTTGTACTGTGTCATCCAAAGGTCGGTGCTTGGATTCGCTATGCCAAGTTTGAGATGAAGAATGGAGAGGTGGCAAAAGCAAGAAACGTTTATGAGAGGGCAGTGGAGAAGTTGGCTGATGATGAGGAAGCAGAGCAGCTTTTTATTGCATTTGCTGAGTTTGAAGAAAGATGTAAAGAAACAGAGCGTGCCAGGTGTACATATAAATTTTCCATCGATCATATTCCCAAGAGAAGGGCTGAAGATTTGTATAAGAAGTTTGTGGCCTTTGTAAAGCAGTGTGGGGACAAAGAAGGGATCGAGGATGCCATTGTTGGGAAGAGAAGGTTTCAGTATGAGGATGAAGTGAGAAAAAATCCCTTAAACTATGATTGCTGGTTTGACTATATAAGATTTGAGGAAGGTGTAGGGAATAAAGAAAGAACAAGGGAGGTGTATGAAAGAGCAATAGCCAATATTCCTCCAGATGAGGAGAAGCGGTATTGGCAACGCTATATCTATTTATGGTTATCTGTGGCTATGCTACAACTGAAAATGATATCCTTGCTTGGAGAGATTGGTAAATGGAATTTATGTAAATGTTTTGACTCAAAAATGCTAAAGTCAGTATACTTCTTGTTAATTGTATTAATTCTGAATCTCAAGGCTGCTCATCAGATATTGGGAAATGCAATTGGAAAAGCTCCTAAAGATAAGATTTTTAAGAAGTATATAGAGATAGAACTGCAGCTTGGTAATATAGATCGGTGTAGAAAATTGTATGAGAAGTATCTGGAATGGTCACCTGAAAATTGCTATGCATGGAGTAAATATGCAGAACTGGAGAGATCTTTATGTGAGACTGATCGAGCAAGGGCAATTGTTGAGCTTGCAATTGCCCAACCAGCATTGGATATGCCTGAGCTATTATGGAAGGTATGGATAAGCTATGCAAAGTTTGAGGCGTCGGCTATGGATGAGGATAGTAGGATATCAGACTTGGATGGTGATGATGTCCAGGCTTATCAACGGGTGTTTGAGAAAGTTGTTAACTACTTCAGATCATCAGCCCCAGAATTGAAAGAAGAAAGGACGATGCTACTGGAGGAGTGGCTCAATCTGGCGGCTGCTTTTGGTGAGCAGGGTGATGTTAGTTTAGTCCAGTCTAAGATGCCCAAGAAGCTTAAGAAGAGAAGGCCAATAACAACTGAAGATGGTCCTGCTGGGTTGTATCTCTTAATCCAATCGGTTTGGGGTGGAGATCGAGTTCCATTCCCAGTATTAAAGATGATCAAGCACCGTTTGAGAGGGTTAAGTATGTCATTTGGGAGTCAAGTTGATCCTGAAAAAACTGAAGAACTGAAAAGGACCAAAACAGATATTGAAAGCAACCTCACAAGAATCTTGAAACTGATTAAGAATGAAGATCAATGCAAGAGAGATGGGAATCCAACAAAGGACTCTAGAAAAGAGACAGAACTTGTGGGACTCATTGAGGACTTCTTCACACAGTACCAGTCGCTGTATGCGCTTTATGATCGTCTCACCGGAGAGAACGGGAAATTAGTTCCTCGGAGAAGAGAGAGGGGGGCTTCCTCTTTGTCTTCCTCAAGCTCAGACTCGGAGTACTTTTCCTCAGACGAAGTAGATGGTATTAACCGAAGACAGTTATCTGAAAATGAACATCCCAATGTCTCAGACACCACCACTAAGGGGGAACCTGAAATAAGTAATACTGAGGTCAACAACCCCACCAAAAAGGAAAAGGAGTTACAGGAGCAGTTAACTCGGCTAAACAAAGAGCTGGAGAGCTTTAGCCAACACAAGAGGGATCTAGAACTTCAAATGGAAAGTAAAGCAACTGAAGTTAAACAGCTAACCGCCAAAAATACTGGGATGCATGCCCGAAATTTGGAGCTTGAATCGTTGGTTAAAAAGAAAGAAGGTGAAGTATCTGATCTGCTGGCGAAACTCAAGAACAATGAGAATCAGGCAATGTCTAATATGACAGAACTGAAGGCGCAAATAAACAATCTCAAACTGGAGGCCAAGTCTCTGCGGACCCAGAAAATTGAAATGGAAGGAATAACACGAAGTAGAAATGAAGCTCTGATCCAAATGGATAGCTTGAGGGACCAGCTTGATGATAAGCATCAAAATTTAGATTCCCTCCGCAACCAGAACAAAGAATTAGAAGCTCAGCTGGAAAAAAAGAGGGAAACAATATCCCAGTACCTGATTCAGATTGAAAATCTGAATGAACAATTAGACGAAAAGATATTGGTGGAAGAAAAAGAGGGTTTTCTTGCAAGGGTAAAGGACCTGGAACTGGAACTGGAATCTCGACGCAACCAGCAAAACGAATTGCAAGAGCAGTTAAGACACAAAATTGATGAGTTTGAACAGCTAGCAGATGAAAACAAAGCCCTGCGGGATAGAAATCTTGAACTAAATAGAGTAATGACACAGAGAGGGGAAGAGTTCTCTGCTTTTGTGAAGGCAAATGAGAGCGATAAAAATGGCGCTTCTATACTGCCTATGACTTTAACAGCAAAAGGTAATGATCAGAGACCAGAGATAGACTTTGTGCAGGAAGAGAAGAGCAAGTTGGAGTCACAAAATGGGATATACCAAAAGGAATATTCAGAAAACCTAGCAAAGATGGAAAATTTGAACGTCAAATTAACAAGTAAGATTGATGATCAGGAGAAAATTATAAAGGAGCAGGCAGAAACCATTCAGCGAATTAGCATGAAGTATGAAGAGGAAAAAATTTGGTCGAAGAAGTTTAAGTTGAATCGGCAATTCACAGAAAGGAGAATGGAAGAATTGGCAGAAGAGGTCCGAAAGAAACTAGAAGACAATATCCGGCTGTTGTACCAGAGAATTCACGTAGCAGAACAGCTGCATAATGAAAATAAAGATAGTTACAAATTGGTAAAGGAGAGGTATGAGAAAGAAAACAAAATGCTCGTAAAGAAAATTGCTAGTTGTGAAAATGAGCTAAGAGGGCTTAGTGTTACGAAACTAACACCAGTAGATGTTCTGAATGGATTAGACTTGGCCGCTGGAAAGCTTGAGGAGCACAAAGAATATTTGCTGAGCCGTGTATCTAAAATGTTGGACGAGGTTCAGTTTGCAAAGGATTGGATAAAGAAAAGAAATGGGGAGATTAAGCAACTGAAGGACAGCGTGGATTGCCTTAATGCGTCACTGGATGATAAAGAAGAACAGGAATTCTTGTTAAGAGAGAAGGTGTGGAAACTAGAAGCGAAGGTGAGCAAAGAAGGAGGGGAGAAGTTGAATCTAATGAAATCAGTGAGCCAGCTTGAAAAGAAAGTGGGAAGATTGGAAAAGAGCCTAAAGGAGAAGGATGAGGAGTTGGTTAATCTAGGGGAGATGAAGAGGGAAGCAATAAGGCAACTGTGTTTTCTGAATGACTATCATCGAAACCGTTGTGACTATCTGAAGTATCTGATCTCAAGGATCAGGGTCACTAACAGGACAGGAGCTTAA 3564 0.4071 MIVLHQVRVRFNEIEQARGIFERFVLCHPKVGAWIRYAKFEMKNGEVAKARNVYERAVEKLADDEEAEQLFIAFAEFEERCKETERARCTYKFSIDHIPKRRAEDLYKKFVAFVKQCGDKEGIEDAIVGKRRFQYEDEVRKNPLNYDCWFDYIRFEEGVGNKERTREVYERAIANIPPDEEKRYWQRYIYLWLSVAMLQLKMISLLGEIGKWNLCKCFDSKMLKSVYFLLIVLILNLKAAHQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLCETDRARAIVELAIAQPALDMPELLWKVWISYAKFEASAMDEDSRISDLDGDDVQAYQRVFEKVVNYFRSSAPELKEERTMLLEEWLNLAAAFGEQGDVSLVQSKMPKKLKKRRPITTEDGPAGLYLLIQSVWGGDRVPFPVLKMIKHRLRGLSMSFGSQVDPEKTEELKRTKTDIESNLTRILKLIKNEDQCKRDGNPTKDSRKETELVGLIEDFFTQYQSLYALYDRLTGENGKLVPRRRERGASSLSSSSSDSEYFSSDEVDGINRRQLSENEHPNVSDTTTKGEPEISNTEVNNPTKKEKELQEQLTRLNKELESFSQHKRDLELQMESKATEVKQLTAKNTGMHARNLELESLVKKKEGEVSDLLAKLKNNENQAMSNMTELKAQINNLKLEAKSLRTQKIEMEGITRSRNEALIQMDSLRDQLDDKHQNLDSLRNQNKELEAQLEKKRETISQYLIQIENLNEQLDEKILVEEKEGFLARVKDLELELESRRNQQNELQEQLRHKIDEFEQLADENKALRDRNLELNRVMTQRGEEFSAFVKANESDKNGASILPMTLTAKGNDQRPEIDFVQEEKSKLESQNGIYQKEYSENLAKMENLNVKLTSKIDDQEKIIKEQAETIQRISMKYEEEKIWSKKFKLNRQFTERRMEELAEEVRKKLEDNIRLLYQRIHVAEQLHNENKDSYKLVKERYEKENKMLVKKIASCENELRGLSVTKLTPVDVLNGLDLAAGKLEEHKEYLLSRVSKMLDEVQFAKDWIKKRNGEIKQLKDSVDCLNASLDDKEEQEFLLREKVWKLEAKVSKEGGEKLNLMKSVSQLEKKVGRLEKSLKEKDEELVNLGEMKREAIRQLCFLNDYHRNRCDYLKYLISRIRVTNRTGA 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2172 1187 SMART hat_new_1 12 43 IPR003107 GO:0006396
Glsi05g2172 1187 SMART hat_new_1 302 336 IPR003107 GO:0006396
Glsi05g2172 1187 SMART hat_new_1 235 266 IPR003107 GO:0006396
Glsi05g2172 1187 SMART hat_new_1 45 80 IPR003107 GO:0006396
Glsi05g2172 1187 SMART hat_new_1 268 300 IPR003107 GO:0006396
Glsi05g2172 1187 SMART hat_new_1 160 194 IPR003107 GO:0006396
Glsi05g2172 1187 SMART hat_new_1 82 116 IPR003107 GO:0006396
Glsi05g2172 1187 SMART hat_new_1 126 158 IPR003107 GO:0006396
Glsi05g2172 1187 Pfam HAT (Half-A-TPR) repeat 13 41 IPR003107 GO:0006396
Glsi05g2172 1187 Coils Coil 660 712 - -
Glsi05g2172 1187 PANTHER COP1-INTERACTIVE PROTEIN 1 592 1184 - -
Glsi05g2172 1187 Coils Coil 1074 1094 - -
Glsi05g2172 1187 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 454 535 IPR011684 GO:0003779
Glsi05g2172 1187 SUPERFAMILY TPR-like 88 390 IPR011990 GO:0005515
Glsi05g2172 1187 Gene3D Tetratricopeptide repeat domain 127 372 IPR011990 GO:0005515
Glsi05g2172 1187 MobiDBLite consensus disorder prediction 539 607 - -
Glsi05g2172 1187 MobiDBLite consensus disorder prediction 563 577 - -
Glsi05g2172 1187 Coils Coil 943 985 - -
Glsi05g2172 1187 Coils Coil 604 645 - -
Glsi05g2172 1187 Coils Coil 876 921 - -
Glsi05g2172 1187 MobiDBLite consensus disorder prediction 578 597 - -
Glsi05g2172 1187 MobiDBLite consensus disorder prediction 546 562 - -
Glsi05g2172 1187 Coils Coil 47 67 - -
Glsi05g2172 1187 Pfam KIP1-like protein 458 529 IPR011684 GO:0003779
Glsi05g2172 1187 Coils Coil 716 836 - -
Glsi05g2172 1187 Coils Coil 997 1017 - -
Glsi05g2172 1187 Coils Coil 1123 1157 - -
Glsi05g2172 1187 Gene3D Tetratricopeptide repeat domain 3 126 IPR011990 GO:0005515
Glsi05g2172 1187 SUPERFAMILY TPR-like 11 93 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2172 Glsi-ChrGlsi05 68080298 68096219 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2172 05 68080298 68096219 Glsi05g2172 05 68080298 68096219 ECH