Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2104 ATGAAGAATTTCCCATTTGAGGAATATGTCTTTGAAATCAAACTGACCCTTGTTCCCATCGGGATTTCGGATTTGGATGGAACTTGCCCTTTGTCCCATTTTTGTATCAACCCGCTTAATCGATTATTTGCAATTCCACCCCCCCCCCCCCCCGGCGCCCGGGTTAAGGTTAAGGCATCAGCGAAGCCGGAGGCGGTTACCGTGCAGTATATAATATCAAGTATTGGTCTTCTCTGCCTCCTTTGCTTTCTAATTTTTGCGGGGACTTGTTGCGTAACACCTGCTCAGGCCAAATTTCCGATCATGGGACATGGACACGGGGACAAAGGCCGACCCTTCAAAAAGCTCAAGGCCTCCGCTAAATTTGACGATTTCCGAAAAGGATTCGTCGATGACGACGATGTTTATATGGGTGAAGATGGATACGATGATGACGGTGAGAAAGAAGCCAAACCCAAAGATTTTAGCAAATTAGAGCTAAAACAGGATCACCTGAATCGGCCTTTGTGGGCTTGTGGCAATGGTCGGATATTTCTCGAGACCTTCTCTCCTTTGTACAAACAAGCTTACGATTTTCTTATTGCTATAGCGGAACCCGTTTGCAGGCCAGAGTCAATGCACGAATACAATCTCACTCCACATTCCCTGTATGCTGCGGTTTCGGTTGGTCTAGAAACAGAAACGATCATATCTGTTTTGAACAAGTTATCCAAGACTATGCTTCCTAAAGAGATGATTAGATTTATACAGGATTCCACGGCAAATTACGGCAAAGTGAAGCTTGTACTTAAGAAAAATCGATACTTTATTGAATCTCCATTTCCAGATGTATTTGAAATAATTTTCTCAGTATTAAAGACATTGCTCAGGGATGAAGTTATATCTCGAGCAAGGATCACTTCTGAGGGTGCAAATGTAGATGGATTTACAATCAGCAAAGCAGCAGGTGAAATTGCAGGAAGACATGATGAGTTGCTGAATGAAGCAGAAGTGGCAGCAGCTGCAGAAGAGAAAGAAACTCATTCATTTGAGATCGATCCCTCCCAGGTTGAAAATGTAAAGCAGCGCTGCTTGCCAAATGCATTAAATTATCCCATGTTGGAGGAGTATGATTTTAGAAATGATACAGTCAACCCTGACCTTGACATGGAACTAAAGCCTCAAGCACAGCCACGGCCGTATCAAGAGAAGAGCCTTAGTAAAATGTTTGGAAATGGAAGAGCAAGATCTGGTATCATAGTTCTACCCTGTGGTGCTGGAAAGTCTCTAGTTGGTGTTTCTGCAGCCTGTCGGATAAAAAAGAGCTGCCTTTGTTTGGCAACAAATGCTGTGTCCGTAGACCAGTGGGCTTTTCAGTTTAAGCTGTGGTCAACTATCCGAGATGAGCAAATCTGTCGTTTCACATCTGATAGCAAGGAGAGATTCCGTGGTAATGCCGGAGTGGTTGTGACCACATATAATATGGTTGCTTTTGGTGGTAAACGGTCAGAAGAATCTGAGAAGATTATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTCCTCATGGATGAGGTACATGTGGTTCCTGCCCATATGTTTCGAAAGGTCATTAGCCTCACTAAATCTCACTGTAAACTTGGGCTCACAGCGACACTTGTGAGAGAGGACGAAAGGATTACAGATCTGAATTTCCTCATTGGTCCCAAGCTGTATGAAGCAAATTGGTTAGATCTAGTGAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAGTTTTTTGCCGAGTATCTGAAGAAAGAAAACTCCAAGAAGAGGCAGGCACTTTATGTGATGAATCCAAATAAGTTCAGAGCATGCGAGTTTCTCATAAAATACCATGAAACACAGCGCGGCGATAAAATTATTGTCTTTGCTGATAATCTTTTTGCTCTCACTGAGTATGCCATGAAACTTCGCAAACCGATGATATATGGTGCTACAAGCCATGTTGAGAGAACAAAAATTCTACAAGCATTCAAAACTAGCAAAGATGTAAACACTATATTCCTTTCCAAGGTAGGTGATAACTCAATTGACATTCCCGAGGCCAATGTAATAATTCAGATCTCTTCACACGCTGGTTCAAGGCGTCAAGAAGCCCAACGTCTGGGTCGTATTCTCAGGGCAAAGGGTAAGCTTCAGGATAGGATGGCTGGGGGTAAGGAGGAGTATAATGCATTCTTTTACTCTCTCGTGTCAACAGATACTCAGGAGATGTACTACTCAACCAAGAGGCAGCAATTTTTAATTGATCAGGGTTATAGCTTTAAGGTAATTACAAGCTTGCCTCCAGCTGGAGAAGAAGTTTCGTTGAGTTACTATCATCTTGAAGATCAATTGGCCCTTCTTGGAAAGGTATTGAGTGCCGGTGATGATGCTGTTGGTCTAGAGCAGTTAGAAGAAGATGCAGATGAAATAGCTCTTCGCAATGCCCGTCGATCTACAGGATCAATGAGTGCCATGTCAGGTGCTAAGGGGATGGTTTACATGGAGTACAGTACTGGGCGTATCAAAGGTCAAGGACAGATCAAGAGCAAGCCAAAAGATCCTGCTAAGCGACACTTTTTATTTAAAAGACGCTATGGCGCACAATAA 2640 0.4292 MKNFPFEEYVFEIKLTLVPIGISDLDGTCPLSHFCINPLNRLFAIPPPPPPGARVKVKASAKPEAVTVQYIISSIGLLCLLCFLIFAGTCCVTPAQAKFPIMGHGHGDKGRPFKKLKASAKFDDFRKGFVDDDDVYMGEDGYDDDGEKEAKPKDFSKLELKQDHLNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIISVLNKLSKTMLPKEMIRFIQDSTANYGKVKLVLKKNRYFIESPFPDVFEIIFSVLKTLLRDEVISRARITSEGANVDGFTISKAAGEIAGRHDELLNEAEVAAAAEEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLIKYHETQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPAGEEVSLSYYHLEDQLALLGKVLSAGDDAVGLEQLEEDADEIALRNARRSTGSMSAMSGAKGMVYMEYSTGRIKGQGQIKSKPKDPAKRHFLFKRRYGAQ 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2104 879 SMART helicmild6 647 725 IPR001650 -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 403 425 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 681 699 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 372 398 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 634 656 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 700 725 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 253 272 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 510 530 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 737 760 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 828 847 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 167 187 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 576 598 - -
Glsi05g2104 879 PRINTS Xeroderma pigmentosum group B protein signature 614 629 - -
Glsi05g2104 879 Pfam Type III restriction enzyme, res subunit 390 546 IPR006935 GO:0003677|GO:0005524|GO:0016787
Glsi05g2104 879 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 402 564 IPR014001 -
Glsi05g2104 879 Pfam Helicase conserved C-terminal domain 169 282 IPR032830 -
Glsi05g2104 879 Pfam ERCC3/RAD25/XPB C-terminal helicase 572 820 IPR032438 -
Glsi05g2104 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 822 IPR027417 -
Glsi05g2104 879 Gene3D - 381 572 IPR027417 -
Glsi05g2104 879 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 619 785 IPR001650 -
Glsi05g2104 879 NCBIfam DNA repair helicase rad25 331 874 IPR001161 GO:0003678|GO:0006289|GO:0006367
Glsi05g2104 879 CDD SF2_C_XPB 583 747 - -
Glsi05g2104 879 CDD DEXHc_XPB 383 552 - -
Glsi05g2104 879 FunFam Putative DNA repair helicase rad25 573 815 - -
Glsi05g2104 879 PANTHER RAD25/XP-B DNA REPAIR HELICASE 158 847 - -
Glsi05g2104 879 SMART ultradead3 387 568 IPR014001 -
Glsi05g2104 879 Gene3D - 573 813 IPR027417 -
Glsi05g2104 879 FunFam Probable DNA repair helicase RAD25 381 572 - -
Glsi05g2104 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 566 IPR027417 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2104 05 67645877 67654848 Glsi05g2104 05 67645877 67654848 ECH