Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi05g2098 | ATGTCTTCTCCAAGCAAACGCCGAGAGATGGACTTGATGAAGCTGATGATGAGTGATTACAAGGTGGAGATGATCAATGATGGCATGCAGGAGTTTTATGTGCATTTTCACGGGCCTAAAGACAGTCCTTATCACGAAGGTGTATGGAAGATAAGAGTGGAGCTACCTGATGCTTATCCTTATAAATCTCCATCCATTGGTTTTGTCAACAAAATATACCACCCTAATGTCGATGAAATGTCTGGCTCAGTTTGCTTAGATGTTATTAACCAGACCTGGAGTCCCATGTTTGACCTTGTTAATGTATTTGAAGTGTTTCTTCCCCAACTTCTTCTGTACCCAAACCCATCAGATCCATTGAATGGTGAAGCTGCTGCATTGTTGATGCGTGATCGTGCTGAATATGAACAAAGAGTCAAAGAATATTGTGAAAAGTATGCCAAGCCAGAAGATGTTGGGGCTTCCCAGGAGGAAAAATCTAGTGACGAGGAGCTGAGTGAAGACGATTATGGGTCTAGTGATGAGGCAATTGCTGGCCAACCTGATCCTTAG | 552 | 0.4293 | MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPKDSPYHEGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAEYEQRVKEYCEKYAKPEDVGASQEEKSSDEELSEDDYGSSDEAIAGQPDP | 183 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi05g2098 | 183 | MobiDBLite | consensus disorder prediction | 146 | 160 | - | - | |
| Glsi05g2098 | 183 | Coils | Coil | 125 | 145 | - | - | |
| Glsi05g2098 | 183 | ProSitePatterns | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | IPR023313 | - | |
| Glsi05g2098 | 183 | FunFam | Ubiquitin-conjugating enzyme 5, E2 | 1 | 159 | - | - | |
| Glsi05g2098 | 183 | SUPERFAMILY | UBC-like | 4 | 148 | IPR016135 | - | |
| Glsi05g2098 | 183 | Pfam | Ubiquitin-conjugating enzyme | 10 | 142 | IPR000608 | - | |
| Glsi05g2098 | 183 | CDD | UBCc | 7 | 143 | IPR000608 | - | |
| Glsi05g2098 | 183 | MobiDBLite | consensus disorder prediction | 146 | 183 | - | - | |
| Glsi05g2098 | 183 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | IPR000608 | - | |
| Glsi05g2098 | 183 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 161 | IPR016135 | - | |
| Glsi05g2098 | 183 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 29 | 136 | - | - | |
| Glsi05g2098 | 183 | SMART | ubc_7 | 4 | 148 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi05g2098 | Glsi-ChrGlsi05 | 67600718 | 67603004 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Glsi05g2098 | 05 | 67600718 | 67603004 | Glsi05g2098 | 05 | 67600718 | 67603004 | ECH |