Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g2076 ATGGACATTGCTCCCGGCGAATGGACAAAACTCTGTAATTCCAGTAGCCAAGAAAAGGACGAGAAAGAACGAGTTAGGATTCCGTTTCCAGTCACCAGCAAGGCAGCAACTACTGTCAAATGCTTTATTGGTTCAACCTTCCCATGGTTACAGAGGATTAATGAGGTGAGAATTCTTTGTCCAATCACTTTGGAAAAGCATGATGACCAAACCAGGAAATGGACAACTTGGAATCCCATTGACAGATGGGATATCAAATGCTCATTGCTCTTCCTGGAATTTGACACGGCCTCTTCCAAACAAACCCACATGAACTCATTAATTGAACTTCTACCAAATTTTCTTTTCCATTTGACAGAAACACATATCTCATCCTTTCCCTCTTGCGTCTACAAAAGCCCATCCCTTCTCATTCATTGCTTCCAAGACTTTTCCCCCCTATCTTCCTCTACTCTAAAATTTCAGTTCATACTTGTCAAAATGAGAGAAATCCTCCACATCCAAGCCGGTCAATGTGGTAACCAAATTGGAGGCAAGTTTTGGGAGGTTATGTGTGATGAACATGGGATTGATGCCGTTGGAAATTACGTAGGCAATTCCCATTTTCAACTTGAGAGGGTTAATGTTTACTACAACGAAGCAACAGGTGGTCGCTATGTTCCTAGAGCTGTGCTGATGGACCTTGAACCAGGGACCATGGACAGCCTGCGTTCTGGTCCTTACGGAAAAATCTTTAGGCCTGATAACTTCGTGTTTGGACAGAACGGAGCTGGAAACAACTGGGCTAAAGGGCATTACACGGAGGGAGCAGAGCTGATCGATTCTGTTCTCGATGTTGTTCGTAAAGAAGCTGAGAACTGTGATTGCTTGCAGGGCTTCCAAATTTGTCATTCACTGGGAGGTGGAACTGGGTCTGGAATGGGGACCCTGCTCATCTCAAAGATCAGAGAAGAGTATCCTGATAGAATGATGATGACTTTCTCGGTCTTCCCATCTCCTAAGGTGTCTGACACAGTGGTCGAGCCCTACAATGCCACCCTCTCTGTTCATCAACTAGTTGAAAATGCCGATGAATGCATGGTCCTGGACAATGAGGCACTTTATGATATCTGTTTCAGAACCCTCAAGCTCACAAATCCAAGTTTTGGTGATCTCAACCATTTGATCTCGACAACAATGAGCGGAGTAACATGTTGCCTCCGCTTTCCCGGCCAACTCAACTCCGATCTCCGTAAACTAGCGGTTAACCTCATCCCTTTCCCACGCCTTCACTTCTTCATGGTTGGTTTCGCACCCTTAACATCCCGGGGTTCCCAAGAATACCGAGCCCTCACCATTCCTGAGCTAACTCAACAAATGTGGGATGCCCGAAACATGATGTGTGCGGCAGACCCACGACATGGTAGGTACCTGACAGCCTCCGCTATGTTCCGTGGGAAAATGAGCACTAAGGAAGTGGATGAGCAGATGATAAATGTACAGAACAAAAACTCATCGTATTTTGTCGAATGGATACCAAACAATGTAAAATCAAGTGTTTGTGATATCCCACCAACTGGGTTATCCATGTCCTCCACGTTCATGGGGAATTCAACATCCATTCAAGAGATGTTCAGGCGTGTTTCAGAGCAATTCACAGTCATGTTTAAGAGAAAGGCTTTCTTGCATTGGTACACTGGGGAGGGTATGGACGAGATGGAGTTTACTGAGGCTGAGAGTAATATGAATGACTTGGTAGCGGAGTACCAACAGTATCAGGAGGCGGCAGCAGAGGAAGACGAGGATTATGAGGAGGAAACTATGCATGACTGA 1812 0.4547 MDIAPGEWTKLCNSSSQEKDEKERVRIPFPVTSKAATTVKCFIGSTFPWLQRINEVRILCPITLEKHDDQTRKWTTWNPIDRWDIKCSLLFLEFDTASSKQTHMNSLIELLPNFLFHLTETHISSFPSCVYKSPSLLIHCFQDFSPLSSSTLKFQFILVKMREILHIQAGQCGNQIGGKFWEVMCDEHGIDAVGNYVGNSHFQLERVNVYYNEATGGRYVPRAVLMDLEPGTMDSLRSGPYGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQEYRALTIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQEAAAEEDEDYEEETMHD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g2076 603 FunFam Tubulin beta chain 161 422 - -
Glsi05g2076 603 FunFam Tubulin beta chain 534 595 - -
Glsi05g2076 603 Pfam Tubulin/FtsZ family, GTPase domain 163 371 IPR003008 GO:0005525
Glsi05g2076 603 CDD beta_tubulin 162 586 - -
Glsi05g2076 603 PANTHER TUBULIN 163 587 IPR000217 GO:0005874|GO:0007017
Glsi05g2076 603 Coils Coil 568 595 - -
Glsi05g2076 603 SUPERFAMILY Tubulin nucleotide-binding domain-like 161 403 IPR036525 -
Glsi05g2076 603 PRINTS Beta-tubulin signature 405 418 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 201 218 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 507 530 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 537 548 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 268 286 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 248 259 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 471 489 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 312 324 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 372 384 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 489 503 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 390 399 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 425 441 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Beta-tubulin signature 572 590 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 Gene3D - 423 533 IPR037103 -
Glsi05g2076 603 SMART Tubulin_C_4 406 543 IPR018316 -
Glsi05g2076 603 Pfam Tubulin C-terminal domain 421 542 IPR018316 -
Glsi05g2076 603 Gene3D Helix hairpin bin 534 589 IPR023123 -
Glsi05g2076 603 Gene3D Tubulin/FtsZ, GTPase domain 161 422 IPR036525 -
Glsi05g2076 603 PRINTS Tubulin signature 266 290 IPR000217 GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Tubulin signature 336 349 IPR000217 GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Tubulin signature 311 332 IPR000217 GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Tubulin signature 530 558 IPR000217 GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Tubulin signature 211 230 IPR000217 GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Tubulin signature 253 264 IPR000217 GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Tubulin signature 170 190 IPR000217 GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Tubulin signature 292 310 IPR000217 GO:0005874|GO:0007017
Glsi05g2076 603 PRINTS Tubulin signature 350 370 IPR000217 GO:0005874|GO:0007017
Glsi05g2076 603 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 300 306 IPR017975 GO:0005525|GO:0005874|GO:0007017
Glsi05g2076 603 SUPERFAMILY Tubulin C-terminal domain-like 404 588 IPR008280 -
Glsi05g2076 603 FunFam Tubulin beta chain 424 533 - -
Glsi05g2076 603 SMART Tubulin_4 207 404 IPR003008 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g2076 Glsi-ChrGlsi05 67452696 67455181 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g2076 05 67452696 67455181 Glsi05g2076 05 67452696 67455181 ECH