LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi05g1834	ATGGGCTGTTTCCACTCTACGAGTAAAAAAAAGTTCCCAGGGAAGGAGGATCCAATAATTCTTGCATCACAGACAGCTTTCAGCGTTAGCGAGGTTGAAGCACTGTTTGAGCTTTTTAAGAGCATCAGCAGTTCTGTCATTGATGATGGATTAATAAACAAGGAAGAGTTTCAGTTGGCAATTTTCAGGAACAGGAAAAATGATAATCTATTTGCAAGTCGGATCTTTGATCTATTTGATGTTAAGAAGAAGGGAGTCATTGATTTTGGCGACTTTGTTAGATCAATTAATGTCTTCCACCCAAATGTACCACAAGAAGAGAAGATAGATTTTGCATTTAGGCTTTATGATTTGGATAGTACAGGCTTTATAGAGCGCCAGGAGGTCAAACAAATGTTAATTGCACTTCTTTCTGAGTCCGAAATGAAGTTGGCCGATGAGACAATAGAAACAATTATCGATAAGACTTTCTTGGATGCTGATCAAAACCAAGATGGAAAAATAGACAAGTCTGAATGGCAAAATTTCGTCTCTAAAAATCCCTCACTGCTAAAAATAATGACCCTACCTTACTTGAGGGAAATAACAACCTCCTTCCCAAGTTTTGTATTTAATTCTGAGGTTGATGATATTGCATAG	639	0.374	MGCFHSTSKKKFPGKEDPIILASQTAFSVSEVEALFELFKSISSSVIDDGLINKEEFQLAIFRNRKNDNLFASRIFDLFDVKKKGVIDFGDFVRSINVFHPNVPQEEKIDFAFRLYDLDSTGFIERQEVKQMLIALLSESEMKLADETIETIIDKTFLDADQNQDGKIDKSEWQNFVSKNPSLLKIMTLPYLREITTSFPSFVFNSEVDDIA	212

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi05g1834	212	PRINTS	Recoverin family signature	168	188	-	-
	Glsi05g1834	212	PRINTS	Recoverin family signature	75	96	-	-
	Glsi05g1834	212	PRINTS	Recoverin family signature	122	140	-	-
	Glsi05g1834	212	ProSiteProfiles	EF-hand calcium-binding domain profile.	67	102	IPR002048	GO:0005509
	Glsi05g1834	212	FunFam	calcineurin B-like protein 3	17	210	-	-
	Glsi05g1834	212	Gene3D	-	18	211	-	-
	Glsi05g1834	212	CDD	EFh	108	178	IPR002048	GO:0005509
	Glsi05g1834	212	ProSitePatterns	EF-hand calcium-binding domain.	117	129	IPR018247	-
	Glsi05g1834	212	SUPERFAMILY	EF-hand	22	202	IPR011992	-
	Glsi05g1834	212	ProSiteProfiles	EF-hand calcium-binding domain profile.	148	183	IPR002048	GO:0005509
	Glsi05g1834	212	ProSitePatterns	EF-hand calcium-binding domain.	161	173	IPR018247	-
	Glsi05g1834	212	Pfam	EF-hand domain pair	106	177	IPR002048	GO:0005509
	Glsi05g1834	212	ProSiteProfiles	EF-hand calcium-binding domain profile.	104	139	IPR002048	GO:0005509
	Glsi05g1834	212	PANTHER	CALCINEURIN B	1	210	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Glsi05g1834	212	SMART	efh_1	152	180	IPR002048	GO:0005509
	Glsi05g1834	212	SMART	efh_1	71	99	IPR002048	GO:0005509
	Glsi05g1834	212	SMART	efh_1	108	136	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi05g1834	Glsi-ChrGlsi05	65978180	65981290	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi05g1834	1	212	EF-hand Containing Proteins	AT4G17615	80.660	1.25e-127	357

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi05g1834	05	65978180	65981290	Glsi09g0245	09	1776128	1779131	CCT
	Glsi05g1834	05	65978180	65981290	Glsi05g1834	05	65978180	65981290	ECH