Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1829 ATGTACAAAGAGCGAGGCGGTGTTGGGTCCAGGTCCGAGGTGGGCACCTTTGATCGGAAGCGAATTAACGACGTCCTCGACAAGCAGCTCGAGCGATCCTCGCCGTCCACTTCTAGAACAATCAAGGCTAAGGACAGGTCGGCGCAATCAGTTTTGGCCGCTAAGCTACCGCATGATCACAGGGATTCTCTCTCTGCCTCCATCTCTAAGAATTCCAATGCTTCAGATGAGGAATCTGAAACAGACAGTGAAGAATCAGATGTTAGTGGTTCTGATGGGGATGACACATCTTGGATCTCATGGTTTTCCAATCTCAGAGGAAATGAATTCTTCTGTGAAGTTGATGATGATTACATACAAGATGATTTCAACCTCTGTGGATTAAGCAGTCAAGTGCCTTACTATGATTATGCGCTTGATTTAATTTTGGATGTTGAATCCTCGCATGGTGACATGTTCACAGAAGAACAAAATGAGCTAGTTGAATCAGCGGCAGAGATGCTCTATGGTCTAATTCATGCTCGATATATTTTGACAAATAAAGGAATGGCTGCCATGCTGGACAAATACAAAAGCTATGACTTCGGCAGATGTCCGAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCTAGGTCAAGTACTGTGAAAATATACTGCCCTAGGTGCGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACTACATTTCCTAACCTCTTTCTGATAACTTATGGGAATCTGAAGCCACCAAAGCCATCGCAGAGCTATGTTCCAAGAGTTTTTGGTTTCAAAATTCACAAGCCATGA 855 0.4421 MYKERGGVGSRSEVGTFDRKRINDVLDKQLERSSPSTSRTIKAKDRSAQSVLAAKLPHDHRDSLSASISKNSNASDEESETDSEESDVSGSDGDDTSWISWFSNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHARYILTNKGMAAMLDKYKSYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPNLFLITYGNLKPPKPSQSYVPRVFGFKIHKP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1829 284 ProSitePatterns Casein kinase II regulatory subunit signature. 198 229 IPR000704 GO:0005956|GO:0019887
Glsi05g1829 284 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 90 194 IPR016149 GO:0005956|GO:0019887
Glsi05g1829 284 FunFam Casein kinase II subunit beta 195 269 - -
Glsi05g1829 284 PRINTS Casein kinase II regulatory subunit family signature 114 128 IPR000704 GO:0005956|GO:0019887
Glsi05g1829 284 PRINTS Casein kinase II regulatory subunit family signature 97 113 IPR000704 GO:0005956|GO:0019887
Glsi05g1829 284 PRINTS Casein kinase II regulatory subunit family signature 244 261 IPR000704 GO:0005956|GO:0019887
Glsi05g1829 284 PRINTS Casein kinase II regulatory subunit family signature 194 215 IPR000704 GO:0005956|GO:0019887
Glsi05g1829 284 PRINTS Casein kinase II regulatory subunit family signature 169 190 IPR000704 GO:0005956|GO:0019887
Glsi05g1829 284 PRINTS Casein kinase II regulatory subunit family signature 216 237 IPR000704 GO:0005956|GO:0019887
Glsi05g1829 284 PANTHER CASEIN KINASE II SUBUNIT BETA 76 283 IPR000704 GO:0005956|GO:0019887
Glsi05g1829 284 MobiDBLite consensus disorder prediction 29 45 - -
Glsi05g1829 284 FunFam Casein kinase II subunit beta 90 194 - -
Glsi05g1829 284 MobiDBLite consensus disorder prediction 24 93 - -
Glsi05g1829 284 Gene3D - 195 269 - -
Glsi05g1829 284 SMART CK_II_beta_2 97 280 IPR000704 GO:0005956|GO:0019887
Glsi05g1829 284 Pfam Casein kinase II regulatory subunit 97 280 IPR000704 GO:0005956|GO:0019887
Glsi05g1829 284 SUPERFAMILY Casein kinase II beta subunit 95 283 IPR035991 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1829 Glsi-ChrGlsi05 65957333 65959787 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1829 05 65957333 65959787 Glsi09g0250 09 1798156 1801365 CCT
Glsi09g0248 09 1787434 1790833 Glsi05g1829 05 65957333 65959787 CCT
Glsi05g1829 05 65957333 65959787 Glsi05g1829 05 65957333 65959787 ECH