Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1811 ATGGACTCGCAACAGAGCAATCTATTCGAGACTGCTTCGCAACCCGACACCGGCAACGATGCATACACTTTCCTTGAATTTAATACTCAGGGTGAGGATTTCGACTACCCTGAGTTTCGTGACCCGATTAGGTCGCCGGTGGCTTGGCCCACTCCGTCCGATTCGCTGGTTGACCCCACGGAACGTGGTGGGGGAGGTGGAGCTGGCTCTGATCACCAGTCCGATGCCTCTCCTGTTTCGGCAGCTCCAGGAAGCGCCACTAAAAGCCGGACGGCCGGGTCCGGCAGCAGCGGGAACAGCCAGATGGTTGACACTCTGGCGGCTGGGATGAGCGGGTTGAATTTTGAGGATGCTGGTGATGATGACAATTATGAGTTTGGTAAAGGAGATTTCACTGAACATGCTTGCCGGTACTGTGGGGTGTCGAACCCAGCATGTGTTGTGAGGTGTAATGTGCCTTCTTGTCGCAAATGGTTCTGTAATTCAAGGGGGAACACGTCCGGTTCACATATCGTAAATCACCTGGTTCGGGCAAAGCACAAGGAAGTCTGTCTTCACAAAGATAGTCCTTTGGGAGAAACAATTCTTGAATGTTACAACTGTGGGTGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCTAAGACAGAAAGTGTCGTTGTTCTTCTATGTCGCGAACCTTGCTTGAGTGTTAATGCATTGAAAGATTTGAATTGGGACCTCAGTCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAACAGTTGAGGGCACGTCAGATAAGTGCTCAGCAAATAAATAAGGTGGAAGAGCTTTGGAAAACAAATCCTGATGCTTCTCTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGCCTGTGGCTATAAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCACTTATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCTCAAAGCAAGGACAGTGTTACAATTCGATGGGATATTGGTCTTAATAAGAAGCGCATTGCATATTTTGTATTCCCAAAGGAAGACAATGAGTTGCGTCTTGTACCAGGCGATGAATTACGATTGCGTTATTCTGGAGATGCTGCACATCCAGCATGGCAGTCAGTGGGGCATGTGATTAAACTAACTGCACAAGAGGAGGTGGCACTTGAGCTTCGTGCCAATCAGGGGGTTCCAGTTGATGTAAATCATGGTTTCAGTGTTGATTTTGTCTGGAAGAGTACAAGCTTTGATAGGATGCAGGGAGCGATGAAAAACTTTGCTGTGGATGAGACAAGTGTAAGCGGGTATATTTACCATCACCTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATACATTGCCTCGTCGTTTTGGTGCACCTGGGCTTCCTGAGCTCAATGCTTCTCAAGTTTTTGCAGTTAAGAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGTCCTCCTGGAACTGGTAAGACTGTAACTTCTGCGGCCATTGTATATCACATGGCAAAACAAGGTCAGGGACAGGTTTTGGTTTGTGCACCTAGTAATGTGGCTGTTGACCAGCTAGCTGAAAAGATAAGTGCTACTGGCTTAAAGGTTGTTAGGCTTTGTGCAAAGTCAAGAGAAGCTGTGAGTTCTCCTGTTGAGCACCTAACACTTCACTATCAGGTTCGAAATCTTGACACATCTGACAAGAGTGAACTACACAAGTTACAACAGCTGAAAGATGAACAAGGAGAACTTTCCAGTAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACAGAGAGGGAGATTTCTCAGAGCGCCGATGTGATCTGCTGCACATGTGTTGGTGCTGGAGATCCTCGGCTGTCAAATTTTAGGTTTCGTCAGGTACTTATTGATGAGTCTACTCAGGCAACAGAACCTGAATGCCTCATCCCTTTGGTTCTTGGGGTCAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTCATTATGTGCAAGAAAGCAGCTCGTGCAGGGCTTGCTCAGTCACTTTTTGAACGGCTTGTGCTACTTGGTGTTAAACCAATTAGATTGCAGGTTCAATATCGTATGCATCCATCTCTTTCAGAATTTCCTTCAAATAGCTTTTATGAAGGCACTCTGCAAAATGGAGTCACTGTTAATGAAAGGCAATTATCAGGAATTGATTTTCCATGGCCTGTGCCCAACCGACCCATGTTCTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCAAGTGGAACATCTTATTTAAATAGGACCGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTCTTAAGGAGTGGTGTAGTTCCAAGTCAGATTGGTGTGATAACGCCTTATGAGGGACAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTTCTCTCAGGCAGCAACTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAAAAAGACTACATCATTTTATCATGTGTAAGAAGTAATGAGCATCAGGGCATTGGATTCTTGAATGATCCTCGGAGGCTCAATGTTGCTTTGACAAGGGCTAGATATGGTATAGTTATTCTGGGAAACCCTAAAGTTCTGAGCAAGCAGCCGCTGTGGAATAGCTTGTTGACGCACTATAAGGAACATGAATGTTTGGTTGAGGGACCTTTAAATAACTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAGAAGATCTACAATGATAGAAGACTCTTTTATGGTGGTGGTCCTGGAGTTGTGGCTAATGATACCTTTGGGTCAGTTGGCTCTGGTCCAACTTCAGATCGGAAGAGCAACCGGGGTAGGGGATCTTATATGCCTCCTGGCCCACCAAATGGAACTCATAAGCCTGGTGTGCACCCTACTGGGTATCCTATGCCAAGGGTTCCTCTGCCACCTTTTCATGGTGGTCCCCAATCACAGCCATATGCCATTCCAACTCGTGGAGCTGTACATGGGCCTGTTGGGGCAGTTCCTCATGTACCACCTCCAGGGAGTCGGGGTTTTGGTGCTGGGCGAGGTAATTCAGGTGCCACGGTTGCCAATCATCTCCCACACCAGCAAGGCTCACAACAGTCTATTGGGAATCTTGGATCCACATTTAATTTCCCAGCTCTGGAAAATCCCAACAGCCAGCCGTCTGTTGGTGGTCCTTTGTCTCAACCTGGGTTTGCCAATAATATGCCAGTCCAAGGGGCAGGCCAATCATATAGAGATCAGTTTTCTGTGACAGGGATGTCCCAGGATTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTTCCGTATAATGTTACTGATTTCTCTACACAGGCCTCTCAGAGTGGATATGCTGTCGATTATGTTACACAAGGAGCACAAGCACAAGGATTCCCTGGAAACTTTCTGAACCAGAACTCTCAAGCCGGATATTCACGTTTTGGTTCTGGGAATGATTTCATGTCTCAGGACTACATGACCCATGGATCACAAGGTCTTTTCACTCAGGTTGGCTTCAATGATCCCTTGCAAGATGATGCACCACAGAGCCAATTTGGTGTGGCCAATGCTAACCCTCTTCAGTCTCAGGGCCTGATGAATTCTCTGTACTCCCAGCCTTTTGCTCACTACAACACGCAGCCAATGAACTTGCAGTCTTCCCAACAGCAGTCTCAGGGTCAGAGCTCCCAAAATCAGAAACTACACTATAACGGTTGA 3810 0.4575 MDSQQSNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLVDPTERGGGGGAGSDHQSDASPVSAAPGSATKSRTAGSGSSGNSQMVDTLAAGMSGLNFEDAGDDDNYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDLNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPVAIKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDSVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRNLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQLSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGGGPGVVANDTFGSVGSGPTSDRKSNRGRGSYMPPGPPNGTHKPGVHPTGYPMPRVPLPPFHGGPQSQPYAIPTRGAVHGPVGAVPHVPPPGSRGFGAGRGNSGATVANHLPHQQGSQQSIGNLGSTFNFPALENPNSQPSVGGPLSQPGFANNMPVQGAGQSYRDQFSVTGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYVTQGAQAQGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMTHGSQGLFTQVGFNDPLQDDAPQSQFGVANANPLQSQGLMNSLYSQPFAHYNTQPMNLQSSQQQSQGQSSQNQKLHYNG 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1811 1269 Gene3D - 719 930 IPR027417 -
Glsi05g1811 1269 MobiDBLite consensus disorder prediction 953 993 - -
Glsi05g1811 1269 Pfam AAA domain 697 892 IPR041679 -
Glsi05g1811 1269 Pfam RNA helicase UPF1, 1B domain 339 428 IPR040812 -
Glsi05g1811 1269 Pfam AAA domain 583 687 IPR041677 GO:0004386
Glsi05g1811 1269 MobiDBLite consensus disorder prediction 956 970 - -
Glsi05g1811 1269 MobiDBLite consensus disorder prediction 1 102 - -
Glsi05g1811 1269 Gene3D - 448 718 IPR027417 -
Glsi05g1811 1269 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 128 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Glsi05g1811 1269 Pfam RNA helicase (UPF2 interacting domain) 134 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Glsi05g1811 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 915 IPR027417 -
Glsi05g1811 1269 Gene3D - 340 428 - -
Glsi05g1811 1269 FunFam regulator of nonsense transcripts 1 homolog 340 428 - -
Glsi05g1811 1269 Pfam Type III restriction enzyme, res subunit 490 563 IPR006935 GO:0003677|GO:0005524|GO:0016787
Glsi05g1811 1269 PANTHER DNA2/NAM7 HELICASE FAMILY 238 1049 IPR045055 -
Glsi05g1811 1269 Gene3D - 570 622 - -
Glsi05g1811 1269 MobiDBLite consensus disorder prediction 1 26 - -
Glsi05g1811 1269 FunFam Regulator of nonsense transcripts 1 719 930 - -
Glsi05g1811 1269 CDD ZBD_UPF1-like 135 257 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Glsi05g1811 1269 CDD DEXXQc_UPF1 484 719 - -
Glsi05g1811 1269 CDD 1B_UPF1-like 340 427 IPR040812 -
Glsi05g1811 1269 MobiDBLite consensus disorder prediction 73 102 - -
Glsi05g1811 1269 MobiDBLite consensus disorder prediction 1242 1269 - -
Glsi05g1811 1269 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 625 IPR014001 -
Glsi05g1811 1269 CDD SF1_C_Upf1 720 909 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1811 Glsi-ChrGlsi05 65749213 65759910 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1811 05 65749213 65759910 Glsi05g1811 05 65749213 65759910 ECH