Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1564 ATGGTCTCCGAATCGGAGCTTATCGGTCGGCTCCGGGAGTTTCTTCGGAGTTCCGACCTCAACACTACCACCACTGCTACAGTCCGCCGGCAGTTGGAGAAGGACTTTGGAATCGATTTATCCGATAGGAAGGCATTCATCAGGGAACAGGTGGACTTGTTCCTTCAAAGCGAGCACGATCAACCGAAGGAACCAGAAGATGAAGAAGATAAAAAAGACGAGGTTCAGCCTGAATCAGAAGAAAGCGATGATTCGAAGGAAGAAATGCAGGACGATGAACGAGGAGACGAAGAAAAAGTAAAGCATGCCAGGAATGGGAAGGACAAAAAACGATCTACCAAATTAGGAAATGAGGTAAGAAAAAAAGGTGGTGGTTTTTGTAAATTATGTAGCCTGTCTCCACAACTTCAGGAATTCATTGGAGCACCAGAAATGGCCAGGACTGAGGTTGTTAAGCAATTATGGGCCTATATTAGGGAGAAGAATTTGCAAGACACAAACAACAGGCGGAATATAATTTGTGATGAACCATTGCGTGCCCTTTTTGGTGTTGATTCCATCAACATGTTTCAAATGAATAAAGTATTGTCAAAGCATATCTGGCCATTGGATTCAAATGAAGTTGTCCAGGTGAAGTCTGCACCAAAGGAAAAGCTGAAGAAGCAAGAGAGAGAAGAAGATCCTGATGAACCAAAAAGAAAGGAGAAAAGGAAGAGAGGAAGCCAATCAGGTTTTCTTGCTCCTCTTCAACTATCTAACGCCCTTGTAAACTTCCTTGGTACTGGTGAAAGTGCATTATCAAGGTCTGAGGTCACAAAAAGAATGTGGGATTACATAAAAGAGTACAACCTTCAGGATCCTTCTGACAAGAGAATGATAATTTGTGATGAGAAGCTGAAAGAACTCTTCGATGTTGACTCCTTTAATGGCTTCACAGTTTCGAAACTACTGGCTCCCCATTTCATAAAGACACAGCAGTGA 981 0.4271 MVSESELIGRLREFLRSSDLNTTTTATVRRQLEKDFGIDLSDRKAFIREQVDLFLQSEHDQPKEPEDEEDKKDEVQPESEESDDSKEEMQDDERGDEEKVKHARNGKDKKRSTKLGNEVRKKGGGFCKLCSLSPQLQEFIGAPEMARTEVVKQLWAYIREKNLQDTNNRRNIICDEPLRALFGVDSINMFQMNKVLSKHIWPLDSNEVVQVKSAPKEKLKKQEREEDPDEPKRKEKRKRGSQSGFLAPLQLSNALVNFLGTGESALSRSEVTKRMWDYIKEYNLQDPSDKRMIICDEKLKELFDVDSFNGFTVSKLLAPHFIKTQQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1564 326 CDD SWIB-MDM2_like 249 321 - -
Glsi05g1564 326 MobiDBLite consensus disorder prediction 55 70 - -
Glsi05g1564 326 Gene3D SWIB/MDM2 domain 239 326 IPR036885 -
Glsi05g1564 326 MobiDBLite consensus disorder prediction 55 117 - -
Glsi05g1564 326 SMART swib_2 245 326 IPR019835 -
Glsi05g1564 326 SMART swib_2 126 205 IPR019835 -
Glsi05g1564 326 MobiDBLite consensus disorder prediction 71 91 - -
Glsi05g1564 326 SUPERFAMILY DEK C-terminal domain 3 56 - -
Glsi05g1564 326 FunFam Upstream activation factor subunit 120 208 - -
Glsi05g1564 326 ProSiteProfiles SWIB/MDM2 domain profile. 244 323 IPR003121 -
Glsi05g1564 326 CDD SWIB-MDM2_like 130 200 - -
Glsi05g1564 326 ProSiteProfiles SWIB/MDM2 domain profile. 125 202 IPR003121 -
Glsi05g1564 326 MobiDBLite consensus disorder prediction 92 117 - -
Glsi05g1564 326 SUPERFAMILY SWIB/MDM2 domain 121 205 IPR036885 -
Glsi05g1564 326 Gene3D SWIB/MDM2 domain 120 209 IPR036885 -
Glsi05g1564 326 MobiDBLite consensus disorder prediction 212 243 - -
Glsi05g1564 326 SUPERFAMILY SWIB/MDM2 domain 239 326 IPR036885 -
Glsi05g1564 326 Pfam DEK C terminal domain 2 55 IPR014876 -
Glsi05g1564 326 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Glsi05g1564 326 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 205 - -
Glsi05g1564 326 Gene3D - 1 59 - -
Glsi05g1564 326 MobiDBLite consensus disorder prediction 212 241 - -
Glsi05g1564 326 Pfam SWIB/MDM2 domain 248 321 IPR003121 -
Glsi05g1564 326 Pfam SWIB/MDM2 domain 129 200 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1564 Glsi-ChrGlsi05 64042904 64047791 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Glsi05g1564 SWIB 2.1e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1564 05 64042904 64047791 Glsi05g1564 05 64042904 64047791 ECH