Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1476 ATGAAAGATGATGATGCAATTCCAACTACGGCAGCTTTTTCAAAGAAGGAAAGCGCCGATTCGGGTCTATTTAGTAAAGGGAGGTATAAATTCTGGGCATTAGCTGCCATTTTGCTTCTCGCGTTTTGGTCCATGTTCACCGGCACAGTATCTCTTCGGTGGTCAGGTACTCTCAACGGTTTATCCAATGACCTCGATACTCCTATCCATGACGACCTTGATGTCCTTGAAATGGAGGAGAGGGAGAAGGTGGTGAAACACATGTGGGATGTATACACCAATAGCCGTCGGATCAGGTTACCACGGTTTTGGCAGGAGGCATTCGAGGCCGCCTATGAAGAGTTAATCAGTGATTTGCCTGCGGTCAGAAATGCCGCCGTCACAGAGATCGCCAAGATGTCTGTCCGCTCCATTGATTTTGATCCACCTCCCATTCAGTCAACGAGAGCACGAGAATTTAGTAAGAGCCTCAAGCAAGATGAAAAAGATAAAGAAGCAGCAACCTCTACTCGTAGCCTGGTTACTATAGCATCTGACTCGCGAGAGGGTGGTTTGATTAGATGTCCAGCTAGCATCAGCCGAAGAAGAAGGAAAATGAAGTGCCCGTACTGCGCGGCGGCGCAGGGGCGCAGCGCCACCACCTGCTCTGGCCGCTTCATAACGGAGTGCACATCTTGCGGGCGAGTAATTGAAGAGCGACAATCCCACCCTCACCATCTCTTTCACCTCCGCGCCCAAGATAACCCTCTCTGTCTTGTCACATCGGACCTCCCCACCCTGCCACCCTTCCATCAAAACCACGACGAGGACCCATTCGAGCCCACCGGTTTCATCACTGCCTTCTCCACTTGGTCCCTTGAGCCCAGTCCTCTCTATCTTCAGTCCTGCCTATCCTTCTCCGGCCATCTCGCTGAGCTTGAGCGAGCTCTCGAATCCTCGTCCTCTTCCTCCACCACCACCACCACCTCTTCCTCCTCATCATCTTCATCGACGGTTGTGGTTGATAATTTGAGGGCGTACATGCAGATTATTGATGTAGCTTCAATACTTGGGTTGGAATACGATATCTCCGACCATGCCTTTCAATTATTCAGGGATTGTTGTTCGGCCACTTGTTTGAGAAACCGGAGCGTTGAAGCGCTTGCCACCGCTGCTCTTGTTCAGGCCATTAGAGAGGCTCAAGAGCCCAGAACCCTTCAGGAAATTTCAATTGCAGCCAATGTACCACAAAAGGAAATTGGAAAATACATCAAGATACTGGGAGAGGCTTTGCAGCTAAGTCAACCTATTAACAGCAATTCCATATCAGTCCATATGCCAAGATTTTGCACACTTCTCCAACTCAATAAATCTGCTCAGGAACTGGCTACTCACATAGGAGAGGTCGTGATCAACAAATGCTTCTGCACCCGCAGGAATCCTATTAGCATATCGGCTGCTGCTATATATTTGGCTTGCCAACTTGAAGACAAACGCAAAACCCAGGCAGAAATCTGCAAGGTGACTGGTCTTACTGAAGTCACTCTCCGCAAAGTGTACAAGGAACTATTAGAGAATTGGGATGATTTACTTCCCTCCAATTACACCCCAGCTGTTCCTCCAGAGAGGGCATTCCCCACGACGATAATTGCTTCAGGTCGATCTTCGGCAGCTAAGGTTGATGGAATAGAGGTTAATTCTTCTTTGGACCGAGAAAAGTTACTAGAAGTTAAACCTAGCAAACCAAATGAGGTTTCGGTCATGGTGCATCAGCACAAAGGGAAGGATGATGAAGGTAAAAGCAATGCTCGTGCTACCCATTCCCCAGTGAATCAGCAGTCAACCTTCTGGCAATCCCAGCTTCCTGTTGGGGCATGTAGTTTTAAAACTACAGGAGAAAAAAATCAGAATGTTTTACAAGGAATGGACGTTGATGGACAGCAGTGTAACCCTCAACAGCCTGAACAGAAGGCTGAAGACATAATTGGTGTTAATACATTTCAAAAACCAAACCAATTTGGTAGTCCCGCTGCTTCAAGTGCTAGCTCCGTCATGAAGCCGTTTTTGGCTCCACCCACATCTGGGCGTCCTCCGAATGTTCGATCAGTGCAGCCCCCTAGGTTAATGCCAGATCACCCTGAGCACTAA 2127 0.4838 MKDDDAIPTTAAFSKKESADSGLFSKGRYKFWALAAILLLAFWSMFTGTVSLRWSGTLNGLSNDLDTPIHDDLDVLEMEEREKVVKHMWDVYTNSRRIRLPRFWQEAFEAAYEELISDLPAVRNAAVTEIAKMSVRSIDFDPPPIQSTRAREFSKSLKQDEKDKEAATSTRSLVTIASDSREGGLIRCPASISRRRRKMKCPYCAAAQGRSATTCSGRFITECTSCGRVIEERQSHPHHLFHLRAQDNPLCLVTSDLPTLPPFHQNHDEDPFEPTGFITAFSTWSLEPSPLYLQSCLSFSGHLAELERALESSSSSSTTTTTSSSSSSSSTVVVDNLRAYMQIIDVASILGLEYDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTIIASGRSSAAKVDGIEVNSSLDREKLLEVKPSKPNEVSVMVHQHKGKDDEGKSNARATHSPVNQQSTFWQSQLPVGACSFKTTGEKNQNVLQGMDVDGQQCNPQQPEQKAEDIIGVNTFQKPNQFGSPAASSASSVMKPFLAPPTSGRPPNVRSVQPPRLMPDHPEH 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1476 708 Gene3D - 337 428 - -
Glsi05g1476 708 MobiDBLite consensus disorder prediction 660 708 - -
Glsi05g1476 708 PRINTS Transcription initiation factor IIB signature 383 402 IPR000812 GO:0006352|GO:0070897
Glsi05g1476 708 PRINTS Transcription initiation factor IIB signature 438 456 IPR000812 GO:0006352|GO:0070897
Glsi05g1476 708 PRINTS Transcription initiation factor IIB signature 216 236 IPR000812 GO:0006352|GO:0070897
Glsi05g1476 708 PRINTS Transcription initiation factor IIB signature 409 424 IPR000812 GO:0006352|GO:0070897
Glsi05g1476 708 PRINTS Transcription initiation factor IIB signature 472 488 IPR000812 GO:0006352|GO:0070897
Glsi05g1476 708 PRINTS Transcription initiation factor IIB signature 504 518 IPR000812 GO:0006352|GO:0070897
Glsi05g1476 708 SUPERFAMILY Cyclin-like 338 428 IPR036915 -
Glsi05g1476 708 FunFam Transcription initiation factor TFIIB 337 428 - -
Glsi05g1476 708 CDD CYCLIN_TFIIB_archaea_like_rpt2 434 520 - -
Glsi05g1476 708 Gene3D - 437 533 - -
Glsi05g1476 708 MobiDBLite consensus disorder prediction 660 675 - -
Glsi05g1476 708 MobiDBLite consensus disorder prediction 146 171 - -
Glsi05g1476 708 Pfam Transcription factor TFIIB repeat 339 420 IPR013150 GO:0017025
Glsi05g1476 708 Pfam Transcription factor TFIIB repeat 437 518 IPR013150 GO:0017025
Glsi05g1476 708 FunFam Transcription initiation factor IIB 437 534 - -
Glsi05g1476 708 PANTHER OS03G0411600 PROTEIN 1 166 IPR010608 -
Glsi05g1476 708 SMART cyclin_7 341 422 IPR013763 -
Glsi05g1476 708 SMART cyclin_7 437 518 IPR013763 -
Glsi05g1476 708 MobiDBLite consensus disorder prediction 310 329 - -
Glsi05g1476 708 MobiDBLite consensus disorder prediction 585 606 - -
Glsi05g1476 708 Pfam Protein of unknown function (DUF1195) 8 144 IPR010608 -
Glsi05g1476 708 SUPERFAMILY Cyclin-like 435 533 IPR036915 -
Glsi05g1476 708 MobiDBLite consensus disorder prediction 153 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1476 Glsi-ChrGlsi05 63382974 63391761 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1476 05 63382974 63391761 Glsi09g0551 09 3832017 3835497 CCT
Glsi05g1476 05 63382974 63391761 Glsi05g1476 05 63382974 63391761 ECH
Glsi09g0551 09 3832017 3835497 Glsi05g1476 05 63382974 63391761 ECH