Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1472 ATGGGAGACTACAACGATCCTTTAATGCGCAACCAAAACTCCGCCGTTCAGGCTCGTACCAAAGCCCAGAACCGTGCCAACGTCCTTCAACTCAAGCTGATTGGACAGAGTCATCCCACTGGTCTCACATCCAACCTTTTGAAGTTATTTGAGCCCAGGCCTCCGTTAGAGTATAAACCACCTCCAGAAAAAAGAAAATGTCCACCATTAACTGGGATGGCACAATTTGTGAGTAAGTTTGCTGAGCCTGGAGATTCTGAATATGCTCCACCTGTCCAAGAAGCTGAAACTCCTACACAAAGAAGAGCTAGAATACACAAACTAAGATTGGAGAAAGGAGCAGCAAAGGCCGCTGAGGAGCTAGAAAAATATGATGCACATAATGACCCAAATGTATCAGGGGATCCCTACAAGACCTTGTTTGTGGCGAGACTTAGTTATGAGACCACTGAGAGCAGAATGAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTGGTCACCGACAAAGCTTCAAATAAGCCTAAGGGTTATGCATTCATTGAGTACCTGCATACAAGGGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATAGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGGACCGTTCCTAATTGGAGACCTCGCCGACTAGGTGGTGGGCTTGGTACTACTAGAGTGGGAGGTGAAGAAGTTAACCAGCGACATTCTGGGAGAGTGGGAGGTGAAGAAGTTAATCAGCGACATGCTGGGAGACAATTTGCTACAATAAATGTTGGAGTTGGGGCTTGGAGCAACTACAATCAGGACCCTCTCGTTCTGAAGAACCAAAAGTGCGGGAGGAACGACCAAGTGACCGTGATAGAGAAAAATCCCGTGAAAGAGGTAGGGAGAGGGATAGAGAACAGGAAAGATCAAGTGAACGCTCTCATGACAGAAACAGGAATCGTGATAGGGAGGATAGGCACCACAGAGATCGGGATAGGAATAGGGATAGAGACAGGGAAAGGGATCGTGGACGTGATCGAGATAGAGTACGTGATCGCGATCGGGACCGTGGCCGTGATCGTGAACGGGAGAGGGACCGTGATCGGGACAAAGAACCTGATCGCCATCGTGAAAGGGATAGGGATTATGAAGTTGGGGACATTGATCGGGGACACTCACATGATAGGGAAGCTGATTATGATCGTGTTGAATCTAAACATGAAACAGACCAACATGGTGAAAAGGAGCGAGACTATGGTCCTGAGGATGAGCGTGGGTGGTACAATCATCCTGAGCATGGACATAGGCATGCTGACCCTGATCATGATACTGAGAAGTATGACCACTATGAGCATCATCAAGCGCGGGGGCATGATCATGGAGATGACCACAGTGATCATTACAATCAATATCCTGACCATGGCAGGATGGAGGATGACTACCACACTGAACGGGCAACATCTGAATCACATGACCGGGAGAATCGCGATATGGACCATAAATATCATCGTTCAGAGAGGTCCCATTCTCGAGAGTATGATTACTAGGACTTTGAGCATAGTATCTCTGAACTTTACTGGCATGGAGTGGTCAAAGCACGACGGAACTTGGTTGCTGATGCTGTCTGTGTGCCATGGTTGA 1656 0.4752 MGDYNDPLMRNQNSAVQARTKAQNRANVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDSEYAPPVQEAETPTQRRARIHKLRLEKGAAKAAEELEKYDAHNDPNVSGDPYKTLFVARLSYETTESRMKREFESYGPIKRVRLVTDKASNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGRVGGEEVNQRHAGRQFATINVGVGAWSNYNQDPLVLKNQKCGRNDQVTVIEKNPVKEVGRGIENRKDQVNALMTETGIVIGRIGTTEIGIGIGIETGKGIVDVIEIEYVIAIGTVAVIVNGRGTVIGTKNLIAIVKGIGIMKLGTLIGDTHMIGKLIMIVLNLNMKQTNMVKRSETMVLRMSVGGTIILSMDIGMLTLIMILRSMTTMSIIKRGGMIMEMTTVIITINILTMAGWRMTTTLNGQHLNHMTGRIAIWTINIIVQRGPILESMITRTLSIVSLNFTGMEWSKHDGTWLLMLSVCHG 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1472 551 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 255 - -
Glsi05g1472 551 MobiDBLite consensus disorder prediction 221 255 - -
Glsi05g1472 551 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Glsi05g1472 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Glsi05g1472 551 Gene3D - 125 250 IPR012677 -
Glsi05g1472 551 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Glsi05g1472 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Glsi05g1472 551 SMART rrm1_1 139 212 IPR000504 GO:0003723
Glsi05g1472 551 MobiDBLite consensus disorder prediction 241 255 - -
Glsi05g1472 551 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Glsi05g1472 551 SUPERFAMILY RNA-binding domain, RBD 129 238 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1472 Glsi-ChrGlsi05 63359595 63365100 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1472 05 63359595 63365100 Glsi05g1472 05 63359595 63365100 ECH