Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1467 ATGTGGCGGTGCGTTGCTCGTGGACTTCGTGTGCCATCTTCCAAGAGATCGATTCCTAATGACTCTCTTAGATCTCACATTTCTAGATTTTTTTCTACTGGGGGAAACTCCTCATATACTGTGGTAGATCATACTTATGATGCAGTTGTTGTGGGTGCCGGTGGTGCAGGGCTGCGAGCTGCTATTGGACTTTCGGAACATGGCTTCAATACTGCTTGCATTACTAAGCTTTTCCCCACTCGTTCACACACTGTTGCAGCTCAGGGCGGAATAAATGCTGCATTGGGAAATATGACTGAGGATGACTGGAGGTGGCACATGTATGACACAGTCAAAGGAAGTGATTGGCTAGGTGATCAGGATGCCATTCAATATATGTGTAGGGAAGCACCAAAGGCAGTCATTGAGCTTGAGAATTATGGATTACCATTTTCCCGAACTGAGGATGGAAGAATATACCAGCGTGCATTTGGTGGTCAAAGCCTGAACTTTGGAAAAGGTGGGCAGGCATACCGTTGTGCATGCGCCGCTGATCGAACTGGACATGCTTTATTGCACACTCTCTATGGCCAGGCCATGAAACATAATACACAATTTTTTGTGGAATACTTTGCATTGGATCTTATAATGAATAGCGAGGGCTGTTGCCAAGGAGTGATTGCATTGAATATGGAGGATGGAACGTTACATCGGTTCCAAGCTGCTTCAACAATTTTGGCCACAGGAGGTTATGGTAGAACATACTTTTCTGCAACCTCAGCACATACGTGCACTGGAGATGGCAATGCCATGGTTGCACGTGCAGATCTCCCACTCCAGGATTTGGAGTTCGTGCAATTTCACCCAACAGGTATATATGGAGCTGGTTGCCTAATCACAGAAGGTTCTCGTGGAGAAGGTGGAATTCTTAGGAATAGTGAGGGTGAGCGATTCATGGAACGGTATGCCCCTACTGCTAAGGATCTTGCATCAAGAGATGTTGTTTCAAGATCAATGACTATGGAGATTCGGGAAGGTCGTGGTGTAGGACCTCTGAAAGATCACATCTATCTACACTTAAATCATTTACCCCCAGATGTGCTCAAAGAAAGGCTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCCGGTGTGGATGTTACAAAGGAACCCATCCCTGTTTTGCCAACAGTGCACTATAACATGGGTGGTATTCCCACAAACCATCATGGAGAGGTGGTTACCATTCAAGGTAATGATCCAGATGCAGTAGTACCTGGATTGATGGCTGCTGGGGAAGCAGCCTGTGCGTCAGTCCATGGTGCCAATAGGCTTGGTGCAAATTCACTTCTGGACATCGTTGTTTTTGGTAGAGCTTGTGCTAATAGAGTTGCAGAAATCCAAAGGCCAGGAGAGAAACAAAAGCCCTTGGAGAAGGATGCTGGTCAAAAAACAATCGCATGGCTGGACAAATTGAGAAACTCAAATGGTTCAATGCCAACTTCAAAGATTCGGTTGAATATGCAACGAATAATGCAAAATAATGCTGCTGTGTTCCGTACACAGGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAGGCATGGGAGAGTTTTCATGATGTCAAGATAAAGGATCGAAGTCTGATATGGAACTCTGACTTGATTGAGACTATTGAGTTGGAAAACCTTTTGATAAATGCCTGCATCACCATGCACTCTGCTGAAGCCAGGAAAGAGAGTAGAGGAGCACACGCCCGTGAGGACTTCACGAAAAGAGATGATGAGAATTGGATGAAGCACACAATGGGATATTGGGAGAAGGAGAAGGTCCGCTTAGAGTATAGGCCGGTGCACATGAATACATTGGATGATGAGATTGAATCATTCCCTCCTAAAGCTCGTGTGTATTAA 1893 0.4496 MWRCVARGLRVPSSKRSIPNDSLRSHISRFFSTGGNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSEGCCQGVIALNMEDGTLHRFQAASTILATGGYGRTYFSATSAHTCTGDGNAMVARADLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIQGNDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLEKDAGQKTIAWLDKLRNSNGSMPTSKIRLNMQRIMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKIKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTMGYWEKEKVRLEYRPVHMNTLDDEIESFPPKARVY 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1467 630 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 47 630 IPR014006 GO:0016627|GO:0022900|GO:0050660
Glsi05g1467 630 SUPERFAMILY FAD/NAD(P)-binding domain 39 466 IPR036188 -
Glsi05g1467 630 NCBIfam succinate dehydrogenase flavoprotein subunit 44 630 IPR011281 GO:0006099|GO:0016627|GO:0050660
Glsi05g1467 630 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 275 393 IPR027477 -
Glsi05g1467 630 Gene3D - 47 454 IPR036188 -
Glsi05g1467 630 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 285 388 - -
Glsi05g1467 630 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 469 585 - -
Glsi05g1467 630 PIRSF SDHA_APRA_LASPO 36 619 - -
Glsi05g1467 630 Pfam FAD binding domain 47 443 IPR003953 -
Glsi05g1467 630 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 582 630 - -
Glsi05g1467 630 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 29 630 IPR030664 -
Glsi05g1467 630 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 81 90 IPR003952 GO:0016491
Glsi05g1467 630 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 389 454 - -
Glsi05g1467 630 Gene3D - 470 580 - -
Glsi05g1467 630 Pfam Fumarate reductase flavoprotein C-term 499 630 IPR015939 GO:0016491
Glsi05g1467 630 Gene3D succinate dehydrogenase protein domain 581 630 - -
Glsi05g1467 630 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 36 259 - -
Glsi05g1467 630 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 489 630 IPR037099 GO:0016491
Glsi05g1467 630 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 285 388 IPR027477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1467 Glsi-ChrGlsi05 63317898 63324465 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1467 05 63317898 63324465 Glsi09g0558 09 3874707 3881123 CCT
Glsi05g1467 05 63317898 63324465 Glsi05g1467 05 63317898 63324465 ECH