Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1358 ATGGCATCCGACAACATCACCACCGGATCCGGATCTACTCTCACCGCTGCCAATGGCGACGTGGATCCTCCGCTCAAGGTAGCATTGATCACCGGCATCACCGGTCAAGATGGTTCCTACCTCACGGAATTCCTCCTCCACAAAGGCTACGACGTCCACGGCCTCATTCGGCGCTCCTCCAACTTCAATACCCAGCGAATCAATCACATCTACATCGACCCCCACAACGCCCACAAGGCTCGAATGAAGCTTCACTATGCGGATCTCTCCGATGCCTCTTCTCTCCGTCGATGGCTCGACACCATCCTCCCCGACGAGGTCTACAATCTTGCTGCTCAGTCTCACGTCGCTGTTTCCTTCGAGATCCCCGATTACACCGCTGATGTTGTCGCCACTGGTGCGCTCCGACTTTTAGAGGCCGTTCGCTCCCACATCGCCGCCACTGGTCGCAGCCATATACGCTATTACCAGGCCGGATCATCCGAAATGTTCGGTTCTACACCACCTCCGCAATCAGAGACTACTCCATTTCATCCTCGGTCTCCTTACGCGGCGTCGAAATGCGCTGCGCATTGGTACACTGTTAACTATCGCGAGGCTTATGGGCTCTTTGCCTGCAATGGGATACTCTTCAATCACGAATCGCCGAGGCGAGGTGAGAATTTTGTTACCCGGAAGATTACGCGGGCTGTAGGGCGTATTAAGATCGGCTTGCAGCGCAAATTGTTCTTGGGAAATTTGCAGGCTTCGAGGGATTGGGGTTTTGCGGGGGATTACGTGGAGGCTATGTGGATGATGCTGCAGCAAGATAAGCCTGATGATTACGTTGTGGCCACGGAGGATTCCCATACCGTGGAAGAGTTCTTGGAGGTTGCATTTGGCTATGTGGGTTTGAATTGGAGGGATCATGTGGAGATTGACAAGAGGTACTTTAGACCTGCGGAGGTTGATAATCTCAAGGGGGATGCAAGCAAGGCCAGGAAAGTGCTTGGGTGGAAGCCCAAGGTGGGATTTGAGCAGTTGGTGAAGATGATGGTAGACGAGGACGTAGAATTAGCTAAGAGGGAGAAAGTGCTTGTCGATGCTGGCTACATGGATGCTCAGCAACAACCTTGA 1116 0.5314 MASDNITTGSGSTLTAANGDVDPPLKVALITGITGQDGSYLTEFLLHKGYDVHGLIRRSSNFNTQRINHIYIDPHNAHKARMKLHYADLSDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIAATGRSHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQRKLFLGNLQASRDWGFAGDYVEAMWMMLQQDKPDDYVVATEDSHTVEEFLEVAFGYVGLNWRDHVEIDKRYFRPAEVDNLKGDASKARKVLGWKPKVGFEQLVKMMVDEDVELAKREKVLVDAGYMDAQQQP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1358 371 NCBIfam GDP-mannose 4,6-dehydratase 26 352 IPR006368 GO:0008446|GO:0019673
Glsi05g1358 371 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 15 361 IPR006368 GO:0008446|GO:0019673
Glsi05g1358 371 CDD GDP_MD_SDR_e 27 351 - -
Glsi05g1358 371 Gene3D - 219 345 - -
Glsi05g1358 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 351 IPR036291 -
Glsi05g1358 371 Hamap GDP-mannose 4,6-dehydratase [gmd]. 26 355 IPR006368 GO:0008446|GO:0019673
Glsi05g1358 371 Gene3D - 29 335 - -
Glsi05g1358 371 Pfam GDP-mannose 4,6 dehydratase 29 345 IPR016040 -
Glsi05g1358 371 FunFam GDP-mannose 4,6-dehydratase 29 227 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1358 29 211 Miscellaneous Gene Families AT4G12250 29.319 2.43e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1358 05 62642397 62643512 Glsi05g1358 05 62642397 62643512 ECH