Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1332 ATGGTGCTCGAGGCGACAATGATTTGTATCGACAATTCCGAATGGATGCGTAACGGGGACTTCGCGCCTTCTCGATTTCAAGCTCAAGCAGATGCTGTCAATCTTATCTGCGGTGCTAAAACCCAGTCCAATCCAGAAAACACAGTCGGAGTTCTCACAATGGCAGGGAAGGGGGTTCGTGTTTTGGTGACTCCTACCAGTGATCTAGGCAAAATCTTAGCTTGCATGCATGGACTAGAAATAGGTGGGGAAATGAACTTAGCTGCTGGCATTCAGGTGGCACAATTGGCTCTTAAACATCGGCAAAATAAAAAACAGCAGCAAAGGATTATCATCTTTGCTGGAAGTCCTGTCAAGCATGAGAAGAAAATGCTGGAGATGATTGGGAGGAAGTTGAAGAAGAACAGCGTAGCCCTTGACATTATCAATTTTGGTGAAGAAGATGAGGGGAAAACAGAAAAGCTGGAAGCACTTCTTGCAGCTGCTACTAATAATGATTCCAGCCATATTGTTCATGTTCCATCTGGTCCCAATGCTCTTTCTGATGTACTTATAAGTACTCCTATTTTTACTGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCTGCTGCGGCAGCAGTTGCAGCTGGTGGTGTATCTGGTTTCGAGTTTGGTGTGGATCCAAACTTGGATCCTGAACTAGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAGGAAGCCGCTGCAAAAAATGCTGCAGACGATGCTGCAAAACAGGAGAAAGGAGGTGGGCAGCCTTCCAGTTCACAAGATGCAACAATGACTGACCGTGCTAGTGTAGCAACATCTGAAGCTGATAATAAGACAAATGATTTGATGGATGATGAGAATGCTCTCCTACAGCAGGCGCTTGCAATGTCAATGGATGATCCTTCCATTAACCATGATGTGAGAGATACAGATATGTCTGAAACAGCTGCAGAGGATCCTGATTTGGCTCTAGCCCTTAAATTGTCTGTAACAGACAGTACAAAGGACTCAGCAAGCCAATCAGACATGAGCAAATTGTTGGCTGACCAGTCCTTCGTATCTTCTATTCTTGCTTCGCTTCCTGGGGTTGACCCAAATGACCCGTCTGTCAAAGACTTGCTGGCCTCCATGCAAAGTCAGTCTGAGTCCCAGCAGAAGAATGAAGATAAGCCACCAAATGAGGAGGAAAAGAAATAA 1218 0.4573 MVLEATMICIDNSEWMRNGDFAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIIFAGSPVKHEKKMLEMIGRKLKKNSVALDIINFGEEDEGKTEKLEALLAAATNNDSSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAVAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKNAADDAAKQEKGGGQPSSSQDATMTDRASVATSEADNKTNDLMDDENALLQQALAMSMDDPSINHDVRDTDMSETAAEDPDLALALKLSVTDSTKDSASQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSESQQKNEDKPPNEEEKK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1332 405 SMART uim 324 343 IPR003903 -
Glsi05g1332 405 SMART uim 222 241 IPR003903 -
Glsi05g1332 405 SMART uim 292 311 IPR003903 -
Glsi05g1332 405 MobiDBLite consensus disorder prediction 379 393 - -
Glsi05g1332 405 FunFam 26S proteasome non-ATPase regulatory subunit 4 3 186 - -
Glsi05g1332 405 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Glsi05g1332 405 Gene3D - 220 306 - -
Glsi05g1332 405 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Glsi05g1332 405 FunFam 26S proteasome regulatory subunit N10 220 306 - -
Glsi05g1332 405 SUPERFAMILY vWA-like 4 174 IPR036465 -
Glsi05g1332 405 MobiDBLite consensus disorder prediction 259 284 - -
Glsi05g1332 405 Pfam Ubiquitin interaction motif 325 336 IPR003903 -
Glsi05g1332 405 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Glsi05g1332 405 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Glsi05g1332 405 MobiDBLite consensus disorder prediction 240 254 - -
Glsi05g1332 405 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Glsi05g1332 405 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 396 IPR027040 GO:0006511|GO:0008540
Glsi05g1332 405 Coils Coil 232 252 - -
Glsi05g1332 405 SMART VWA_4 2 175 IPR002035 -
Glsi05g1332 405 CDD VWA_26S_proteasome_subunit 1 188 - -
Glsi05g1332 405 MobiDBLite consensus disorder prediction 365 405 - -
Glsi05g1332 405 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Glsi05g1332 405 CDD PSMD4_RAZUL 345 382 - -
Glsi05g1332 405 MobiDBLite consensus disorder prediction 240 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1332 Glsi-ChrGlsi05 62457636 62463119 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1332 05 62457636 62463119 Glsi09g0654 09 4522251 4528131 CCT
Glsi05g1332 05 62457636 62463119 Glsi05g1332 05 62457636 62463119 ECH