Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1320 ATGATGTTAGACGGAGCCGAAGATGAAGAGAAGTATCTGGCCGCCGGAATTGCTGTCCTTCAACAGAATGTCTTCTACATGCACCGTGCTTTGGATTCCAACAATCTAAGGGATGCTTTGAAGTATTCAGCTCAGATGCTTTCTGAGCTTCGGACTTCACACCTTTCCCCCCACAAGTACTACGAACTCTACATGCGGGCTTTTGATCAATTGAGGAAGCTGGAGGTGTTCTTTGAGGAAGAGACTCGTCGTGGTTGCTCCATTATTGATCTTTATGAACTTGTCCAGCATGCGGGCAATATTTTGCCTCGATTGTATCTCCTCTGTACAGTAGGATCTGTATACATCAAATCCAAGGAAGCCCCTGCTAAGGATGTTCTCAAGGATCTTGTGGAAATGTGTCGTGGCATACAGCACCCTGTTCGAGGACTCTTCCTCAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCTGATATTGGTTCTGAGTATGAAGGGGATGCAGACACTGTAATGGATGCTGTAGAATTTGTGCTTCAAAATTTCACTGAAATGAACAAACTTTGGGTGCGAATGCAGCATCAGGGGCCTGCCCGGGAGAAGGAGAGACGGGAGAAAGAAAGGAGTGAGCTTCGTGATCTTGTTGGGAAGAATCTCCATGTTCTCGGTCAGATAGAGGGTGTTGACCTTGATATGTACAAAGACATCGTCCTTCCCCGAGTCCTAGAGCAGGTTGTGAATTGCAAAGATGACTTAGCCCAATTCTATCTGATGGATTGTTTAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATATATTGTTGGGTGCTTGCCCTCAGCTTCAGCCAGCTGTTGACATCGAGACAGTGCTGTCCCAATTAATGGATAGACTTTCAAATTATGCTGCCTCAAGTGCAGAGGTGTTACCAGAGTTTTTGCAAGTGGAAGCATTTGCCAAGTTAAGCAATGCCATTGGCAAGGTGATAGAAGCACAGGCTGACATGCCCACTGTTGGGATTGTAACTTTATATTCATCTCTTCTCACCTTCACACTTCATGTCCACCCCGATCGACTTGATTATGCAGATCAAGTTCTGGGAGCATGTGTGAGGAAACTCTCTGGCAAAGGGAAGATTGAGAACAGCAAGGCAACAAAGCTGATTGTTGCCCTTTTAAGTGCACCACTAGAGAAATATAATGATATTGTAACTGCCTTGAAGCTTTCAAACTATCCTCGTGTCATGGAATACCTTGATATTCCAACAACTAAGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAACCGAACATATATTTCTACTTCAGACAAGGTTGAAGCATTGTTTGAACTGATAAAGGGGCTTATTAAGGATTCTGATGTGACTTCAAACGATGAGCTGGACGAAGATGATTTCAAAGAGGAGCAGAGTTCTGTTGCACGTCTAATCCAGATGCTCTATAATGATGATCCCGTAGAGATGTTTAAGGTTATAGATACTGTGAGGAAGCATATACTGACTGGAGGACCAAAACGTCTACCTTTCACTGTTCCTTCTCTTGTTTTTTCTTCTCTAAAGTTGGTCAGACATTTGCAAGGTCAAGATGAAAATCCTTTTGGAGACGATACATCAACAACACCTAAACAGATTTTTCAGCTTTTGAATCAGACCATCGAGACTCTATCAGGTGTCCCTGCACCGGAATTGGCTTTACGGTTGTACCTGCAATGTGCTGAGGCTGCAAATGACTCTGATTTAGAACCTGTTGCATATGAATTTCTCACCCAAGCTTATATTCTGTATGAAGAAGAAATTTCTGATTCCAGATCACAGGTTACTGCTTTACATTTAATTATTGGAACTCTACAGAGGATGCGTGTCTTTGGTGTTGAGAACAGGGATACTTTGACTCACAAGGCCACTGGGTATTCGGCGAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCTGTGTATGCATGCGCACACCTGTTTTGGGTTGATGATCATGACAACATGAAAGATGGAGAGAGAGTCTTGTTATGCCTCAAGCGAGCTTTAAGAATTGCAAATGCTGCTCAACAAATGGCACATGCTGCCCGAGGTAGCACTGGATCAGTTATGCTTTTCATTGAGATATTGAACAAGTATCTTTACTTCTATGAGAAGGGGAATCCACAAGTCACTGTTGCTGCTATCCAGGGACTAATTGAATTGGTCATGACGGAAATGCAAAGTGAAACCCCAACTCCAGATCCAGCTGCAAATGCTTTCTTTGCCAGCACAATGCGATATATAAAGTTCCAGAAGCAAAAAGGTGGAGCAGTAGGCGAGAAGTATGAGCCCATCAAGGACCACGAGTCAGTTCCTGCTATGTGCTGA 2397 0.4322 MMLDGAEDEEKYLAAGIAVLQQNVFYMHRALDSNNLRDALKYSAQMLSELRTSHLSPHKYYELYMRAFDQLRKLEVFFEEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVMDAVEFVLQNFTEMNKLWVRMQHQGPAREKERREKERSELRDLVGKNLHVLGQIEGVDLDMYKDIVLPRVLEQVVNCKDDLAQFYLMDCLIQVFPDEYHLQTLDILLGACPQLQPAVDIETVLSQLMDRLSNYAASSAEVLPEFLQVEAFAKLSNAIGKVIEAQADMPTVGIVTLYSSLLTFTLHVHPDRLDYADQVLGACVRKLSGKGKIENSKATKLIVALLSAPLEKYNDIVTALKLSNYPRVMEYLDIPTTKVMATVIIQSIMKNRTYISTSDKVEALFELIKGLIKDSDVTSNDELDEDDFKEEQSSVARLIQMLYNDDPVEMFKVIDTVRKHILTGGPKRLPFTVPSLVFSSLKLVRHLQGQDENPFGDDTSTTPKQIFQLLNQTIETLSGVPAPELALRLYLQCAEAANDSDLEPVAYEFLTQAYILYEEEISDSRSQVTALHLIIGTLQRMRVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACAHLFWVDDHDNMKDGERVLLCLKRALRIANAAQQMAHAARGSTGSVMLFIEILNKYLYFYEKGNPQVTVAAIQGLIELVMTEMQSETPTPDPAANAFFASTMRYIKFQKQKGGAVGEKYEPIKDHESVPAMC 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1320 798 PIRSF Retromer_Vps35 2 793 IPR005378 GO:0015031|GO:0030906|GO:0042147
Glsi05g1320 798 Pfam Vacuolar protein sorting-associated protein 35 13 747 IPR005378 GO:0015031|GO:0030906|GO:0042147
Glsi05g1320 798 SUPERFAMILY ARM repeat 170 745 IPR016024 -
Glsi05g1320 798 Gene3D - 465 775 IPR042491 -
Glsi05g1320 798 FunFam Vacuolar protein sorting-associated protein 35 466 775 - -
Glsi05g1320 798 PANTHER VACUOLAR SORTING PROTEIN 35 6 789 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1320 Glsi-ChrGlsi05 62384875 62396414 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1320 05 62384875 62396414 Glsi05g1320 05 62384875 62396414 ECH