Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1163 ATGGCGGCAGCTAGGGTTTTCGGGTCATACAGTAGGGCGCTGATGGCGGCGGCGGCGAAGGGCGCTTCGTCCGGTGGAGGAACTGCGGCGAAAACGGCCCCACAGAAGAGTCGAGCTAACATCGGCTTACAGAAGGTGGTCCCTATCTCTCCGCAGCTTGGTAAGTTTCTCGGTGCCTCTCAAGCATCACGCACTGATGCCATCAAGAAAATCTGGGATTACATCAAGCTCCACAATCTTCAGAATCCTACAAATAAGAAAGAGATCTTTTGCGATGAGAAGCTGAAGACCATTTTTGATGGGAAAGATAGAGTAGGGTTCACAGAGGTTGCCAGATTTCTGTCTAACCATTTTATCAAATCAGGCTGA 369 0.5014 MAAARVFGSYSRALMAAAAKGASSGGGTAAKTAPQKSRANIGLQKVVPISPQLGKFLGASQASRTDAIKKIWDYIKLHNLQNPTNKKEIFCDEKLKTIFDGKDRVGFTEVARFLSNHFIKSG 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1163 122 Pfam SWIB/MDM2 domain 47 118 IPR003121 -
Glsi05g1163 122 Gene3D SWIB/MDM2 domain 37 122 IPR036885 -
Glsi05g1163 122 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 32 119 - -
Glsi05g1163 122 SUPERFAMILY SWIB/MDM2 domain 43 120 IPR036885 -
Glsi05g1163 122 CDD SWIB-MDM2_like 47 118 - -
Glsi05g1163 122 SMART swib_2 43 122 IPR019835 -
Glsi05g1163 122 ProSiteProfiles SWIB/MDM2 domain profile. 42 120 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1163 Glsi-ChrGlsi05 61267582 61269282 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Glsi05g1163 SWIB 2.7e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1163 05 61267582 61269282 Glsi05g1163 05 61267582 61269282 ECH