Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1152 ATGGACATTGAGCATTGGAAGTTGGCCACAGTACGAATATATGGAATTCCGATTTTACGTGTGTTTGACGAAGATTCCCAATTATCTTCGCTCGAATTTCATTTCCGAAACAAGGCTTATCTTGTTCACTATATGGCGAGTGAATCCGGCACAAAACCTCCCTCAACTTCGTCGCCAAATGCGGAGGAATCTTACATTGGGAGCTTCATAAGCCTGATTTCCAAGTACGAGATTCGTTACGAAGGCATTCTATATCACCTCAACATTCAGGATTCCACTATTGGCTTGACGAGCGTCAGGTCTTATGGAACAGAGGGGAGAAGAAAAGATGGTCCACAAGTTCCTCCAAGTGATAAGGTTTATGAATACATTCTTTTCCGAGGAAACGACATTAAGGATTTGCAGGTCAAGTCCCCCTCTACATCTGCCAAAGCAGAAGAGCAGATATTCAGTGATCCAGCTATCATTCAGTCACAATATTCTGGAGTTCCTTCAAGTTCTCCTTTGGCTTCAGCTGGTGGGAGAAATTTAACAAAATCAATTCAAAGGCAAGATACTCCTGCTATGACCAGTAGAGACCTTCCTGTTGGGCTGCCTTCTCATCAATCTGTAATACAACTGGGCCCATCAGATCAATCTGCTGTTACTCAAGTTTCTGGTGCTCCATCGTTTTCTAAACCAATGTATTGGCCAGGATATAGTGGAATATCAGGCAGTAGCTCTAATTCTACGCAGCAATCTGGTCCACCTCAGCCCCCATCAGTGGTGTCACCTTTAAATATGCAGAGCTGGGTGCAAACTCCTGAAACTCATGCATCTTCAAAAATGGGCTGGACTACTTTATCTGAGTGTGGTATTCCTGTATCTTCTCTAACTGCTTCATCTCTTGTAAATCCAACTTGTGCACCCACTCCTACCCCTTTGCAAACTTCTGATTCTCTAGATATTTCATCCCTTTTGTCTTCTAAGACACCAATACCATATCATGCATCCAAGACTTTATCAAGCATGCCTTTTTCTTCACCTTTCCAAGGCATAAACTCTATTGATAACCAATTTTCTGGCATGATTTCTCCTGATACGAGATCAAGCTTTCCTGGACATTCAGTCCATCATTCTGCTTCTTCATCTGTAGATTCTACTTCAGGCCCCTTGCTAACACCTCCGTCTTTGTTAACTCCAGATCAGTTTGCTCAGCCTAGACAGCATTTCTTTTCTTTAACACAGAACCTGACCCCTGATCAGAAGCATATAGTTTCTCTGACACCAACATCCTTTAGTTCCTCTTTATTAGTACCTTCTCCAGCATCTCAAGCACCATTGCTGCCATTGCCGCCATTGCCAACCTCAGTGCATAAGCCTCAGTACTCAGCTCCACAGTTCAGTGAAGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAAAAAGGATGAAGTATGGGGTTCTCTTGGGAGGGCAACTAAGACAATAGAGGGAGTGGAGGATAATGCTTCCACTCACAGTTTGGGTGACAGAGAGTGTCATGGACTGATACCAAACCCAAACCCAAACCCTAAGCCTGCATATAAGAAAGATGACTTTTTTGACACAATTTCATGTAACTCTCTGACTCATGGATCAAGGAATTGGCAGAATCGTTTATCTGAGAGAATGAAGCATGATACTGAGACATTTGGCAATTTCCAACAGAGGCCTCCAATGGGTTATGGTGCCTATGGTGCCGGACGTGGTGAAAATTACCGGGGCTCATACAATTTGGGAAGGGGTTATGGCTATGGCGGGAGAGGGCGTGGCTGGAACCTGCCTTTCTAG 1812 0.4376 MDIEHWKLATVRIYGIPILRVFDEDSQLSSLEFHFRNKAYLVHYMASESGTKPPSTSSPNAEESYIGSFISLISKYEIRYEGILYHLNIQDSTIGLTSVRSYGTEGRRKDGPQVPPSDKVYEYILFRGNDIKDLQVKSPSTSAKAEEQIFSDPAIIQSQYSGVPSSSPLASAGGRNLTKSIQRQDTPAMTSRDLPVGLPSHQSVIQLGPSDQSAVTQVSGAPSFSKPMYWPGYSGISGSSSNSTQQSGPPQPPSVVSPLNMQSWVQTPETHASSKMGWTTLSECGIPVSSLTASSLVNPTCAPTPTPLQTSDSLDISSLLSSKTPIPYHASKTLSSMPFSSPFQGINSIDNQFSGMISPDTRSSFPGHSVHHSASSSVDSTSGPLLTPPSLLTPDQFAQPRQHFFSLTQNLTPDQKHIVSLTPTSFSSSLLVPSPASQAPLLPLPPLPTSVHKPQYSAPQFSEEFDFEAMNEKFKKDEVWGSLGRATKTIEGVEDNASTHSLGDRECHGLIPNPNPNPKPAYKKDDFFDTISCNSLTHGSRNWQNRLSERMKHDTETFGNFQQRPPMGYGAYGAGRGENYRGSYNLGRGYGYGGRGRGWNLPF 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1152 603 Gene3D - 56 141 - -
Glsi05g1152 603 ProSiteProfiles FFD box profile. 520 535 IPR025761 -
Glsi05g1152 603 MobiDBLite consensus disorder prediction 498 518 - -
Glsi05g1152 603 SMART FDF_2 459 562 IPR019050 -
Glsi05g1152 603 Pfam FDF domain 460 560 IPR019050 -
Glsi05g1152 603 SUPERFAMILY Sm-like ribonucleoproteins 64 139 IPR010920 -
Glsi05g1152 603 CDD LSm14_N 63 136 IPR025609 -
Glsi05g1152 603 ProSiteProfiles DFDF domain profile. 453 489 IPR025762 -
Glsi05g1152 603 MobiDBLite consensus disorder prediction 235 250 - -
Glsi05g1152 603 Pfam Scd6-like Sm domain 65 138 IPR025609 -
Glsi05g1152 603 MobiDBLite consensus disorder prediction 235 258 - -
Glsi05g1152 603 MobiDBLite consensus disorder prediction 357 393 - -
Glsi05g1152 603 ProSiteProfiles Sm domain profile. 57 140 IPR047575 GO:0003723
Glsi05g1152 603 PANTHER SCD6 PROTEIN-RELATED 62 598 - -
Glsi05g1152 603 SMART LSM14_2 59 160 IPR025609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1152 Glsi-ChrGlsi05 61180155 61189061 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1152 05 61180155 61189061 Glsi05g1152 05 61180155 61189061 ECH