Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1045 ATGGCTCCTGCAAATGAAAAGGGGCGATTGGAGGAAAGCACAAAACAGAGGCAATTAGGAGCTCTTGTAGATGCGAACTGCTTAGCTTGTAGGATTATGAGTGGCATTTACTCAGCAAGCTCAAAGTGGATGGGACCCTGGTCCCTTCCACCTCACAGCTTTGTTAGTGCGGGGGCGCCGCCCCCCGCTAATTGGTCTCTGCTTTGTTTGGTTTGGAAGAGGTTTCCGTGGTTCTGCGAATTGGGTATTGATGGGTGTATGTTCATGTCGATAATATGTTCAGTTGGGTCCGCTTTGTACCGCAGCAAAGTGCTCTCTTACAAACAATGCTTATTTAGAATGTATTATGCTGCTTCTTCGGCATTGATGTTGGAGGACCATGTGTTCGACGAAAGTCCAAGAGTTGATGACAACGTAATGGTCAATTTTGGAGGAAATACGTTGAGAGTCCCAAGTCTCGGAAGAAAGCGCAATTTATTTCATATAGTGGTCAAGGTATGCAAAACCTTGAATTGGGAGGTTGCAAGGGAAATAAGGTTCTGGAATGCTGTCAGGAGGCATGGATTTTCTCATGCAATCACTTCCTTTAGAATTATGATTCACATATTTGCATCCGCTGAGATGCATATGGAAGTATTTGCTTTGCTTAGAGATATTATTGGATTCTATAGCAAGGCCAAGTACGACCCATGCAAATTGTTTTCGATTTTGCTAGATTCACCTCACTTTGTGGAAAGATCAATTGTTGTGTTTGACATACTCATAAAAGTATTTGCATCCAATTCTATGCTTGAAAATGCTTTTGACGTGTTTGTGAGAGTTAAGCATTTTGGGCTTGAGCCAAATATATTGTCATGCAATTTCCTGTTGAAATGCTTGGTAGAAGCAAACAGAGTGGAGTTGGTTAGAAATTTATTTGAAGAGCTAAAAATCTCGGGTCCATCACCTAATATCTACACCTATACAATTATGATGAACTTTTATTGTAGAGGAGATCTTGGGCTGGATGCATATATTAAACAAGCTACTGGGATTTTAGAAGAAATATGTAGGGCTGGGGAAAACCCAACTGCTGTCACATATAGTACTTATATTCATGGACTTTGTAAACTAGGTTCTGTTTATGATGCTCTGCAGTTAATTCGTCATTTGAGGTATAGAGACCAGCCTCTCAATAGCTATTGTTTTAATGCTGTAATTTATGAACTTTGTCAAAGAGGTGCGGGTCATGAAGCCTTGCAAGTTTTGGAAGAAATGCAGAGTTCTGGAATATTGCCTGATGTTTATAGCTACAGTATTTTAATTGATGCATTTTGCAAGGAAGGGGATATAGAGAAAGGTTTTGACTTGATGGAGCAAATGGAACTAAATAATATAAAACCATCCATATGTACCTACACCTCCCTCATTTGTGCTCTATGCAAGAGTAAGCCGATGGAATTCTCAATGCGTATCTTTCGGAATATTGGTTCTTCTGGTTACAAATATGATCAGACTGCTTATGAAACTTTAATCAATGGATTTTGCTGTCAAGGTGATATGGATTCCGCCAGCAAGCTTTTGGAGGAGATGATTAGAAATAATCTGGTTCCTACTGCTTTTAGTTGCCACAGTCTAGTTAAAGGATACTACAAACTGGGACTCTTAGACAAGGCATTGGAAGTTTTAAAAATCATGCTACAAGGTGGTGTCTTGCCGGATACCAGCACCTGCAATTTAATTATTGATGGATTCTGTCACGAAGGTCACTTCAAGGAAGCCTTGGCACTGTTAGAGGAGTTCCAAGACCAAGGAATTGACCTAAACTCACATTCATATAATGCGTTCATCAACTGGCTGTGCAAGGAAAGACATCCAGAAAGGGCATGGGAGCTCTTTCCAAGAATGCTTAAAAGGAATGTACTTCCTGGAGTTGTTAATTATATTACTCTTATAGATGGTTTTGCCAAACAATCAAATGTAAAGAAAGCCTTGATTTTGTCCATAAAAATGCTAGAAGTTGGGATCACTTCCAACACCATCACATGTACAGACCTTATTAACATATTTTGCTATCAGGGCAGAATGGATGCAGCATATATAATTTTTAAGGAAATGATGAAAAGGGGTTTAGATCCAGATCAGATTTTATATACATCTTTAATAGCTGGCTTTTGTAGTACTAGAGATATGAGAAATATGAGAAAGGCCTGGGAATTATTCCAAGAAATGTCGAGGAAAGACCTTTTGCCAGATGTAATTACTTACACATGCTTGATGGATGGATTTTGCAAGTTGAACCGGATAGATATGGCCACTTTTCTGTTTGATGAAATGAACAGAAATGCAATTACTCCTAATGTTGTAACTTACACTGTTCTCATTGCTTGGTACCATAAAAACAAATGCATAGACCAGGCACATAAGTTATACGTTGAAATGAAGGCAAGGGGAATTTCACCAGATGACATAACTCATAAGGTTCTAAGTCTGAAAGCTGGTGGGAGCTGA 2490 0.3924 MAPANEKGRLEESTKQRQLGALVDANCLACRIMSGIYSASSKWMGPWSLPPHSFVSAGAPPPANWSLLCLVWKRFPWFCELGIDGCMFMSIICSVGSALYRSKVLSYKQCLFRMYYAASSALMLEDHVFDESPRVDDNVMVNFGGNTLRVPSLGRKRNLFHIVVKVCKTLNWEVAREIRFWNAVRRHGFSHAITSFRIMIHIFASAEMHMEVFALLRDIIGFYSKAKYDPCKLFSILLDSPHFVERSIVVFDILIKVFASNSMLENAFDVFVRVKHFGLEPNILSCNFLLKCLVEANRVELVRNLFEELKISGPSPNIYTYTIMMNFYCRGDLGLDAYIKQATGILEEICRAGENPTAVTYSTYIHGLCKLGSVYDALQLIRHLRYRDQPLNSYCFNAVIYELCQRGAGHEALQVLEEMQSSGILPDVYSYSILIDAFCKEGDIEKGFDLMEQMELNNIKPSICTYTSLICALCKSKPMEFSMRIFRNIGSSGYKYDQTAYETLINGFCCQGDMDSASKLLEEMIRNNLVPTAFSCHSLVKGYYKLGLLDKALEVLKIMLQGGVLPDTSTCNLIIDGFCHEGHFKEALALLEEFQDQGIDLNSHSYNAFINWLCKERHPERAWELFPRMLKRNVLPGVVNYITLIDGFAKQSNVKKALILSIKMLEVGITSNTITCTDLINIFCYQGRMDAAYIIFKEMMKRGLDPDQILYTSLIAGFCSTRDMRNMRKAWELFQEMSRKDLLPDVITYTCLMDGFCKLNRIDMATFLFDEMNRNAITPNVVTYTVLIAWYHKNKCIDQAHKLYVEMKARGISPDDITHKVLSLKAGGS 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 672 706 IPR002885 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 745 779 IPR002885 -
Glsi05g1045 829 NCBIfam pentatricopeptide repeat 429 462 IPR002885 -
Glsi05g1045 829 NCBIfam pentatricopeptide repeat 674 707 IPR002885 -
Glsi05g1045 829 NCBIfam pentatricopeptide repeat 710 746 IPR002885 -
Glsi05g1045 829 NCBIfam pentatricopeptide repeat 570 602 IPR002885 -
Glsi05g1045 829 NCBIfam pentatricopeptide repeat 535 568 IPR002885 -
Glsi05g1045 829 NCBIfam pentatricopeptide repeat 782 815 IPR002885 -
Glsi05g1045 829 NCBIfam pentatricopeptide repeat 500 532 IPR002885 -
Glsi05g1045 829 NCBIfam pentatricopeptide repeat 747 781 IPR002885 -
Glsi05g1045 829 NCBIfam pentatricopeptide repeat 394 428 IPR002885 -
Glsi05g1045 829 NCBIfam pentatricopeptide repeat 604 637 IPR002885 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Glsi05g1045 829 Pfam Mitochondrial 28S ribosomal protein S27 534 597 IPR034913 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 744 IPR002885 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Glsi05g1045 829 Gene3D Tetratricopeptide repeat domain 389 479 IPR011990 GO:0005515
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Glsi05g1045 829 SUPERFAMILY TPR-like 369 708 IPR011990 GO:0005515
Glsi05g1045 829 Gene3D Tetratricopeptide repeat domain 149 310 IPR011990 GO:0005515
Glsi05g1045 829 Gene3D Tetratricopeptide repeat domain 595 663 IPR011990 GO:0005515
Glsi05g1045 829 Gene3D Tetratricopeptide repeat domain 664 724 IPR011990 GO:0005515
Glsi05g1045 829 Gene3D Tetratricopeptide repeat domain 311 388 IPR011990 GO:0005515
Glsi05g1045 829 Gene3D Tetratricopeptide repeat domain 480 594 IPR011990 GO:0005515
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Glsi05g1045 829 Pfam PPR repeat 249 278 IPR002885 -
Glsi05g1045 829 Pfam PPR repeat family 744 788 IPR002885 -
Glsi05g1045 829 Pfam PPR repeat family 281 330 IPR002885 -
Glsi05g1045 829 Pfam PPR repeat family 602 650 IPR002885 -
Glsi05g1045 829 Pfam PPR repeat family 672 720 IPR002885 -
Glsi05g1045 829 Pfam PPR repeat family 392 440 IPR002885 -
Glsi05g1045 829 Pfam PPR repeat 493 524 IPR002885 -
Glsi05g1045 829 Pfam PPR repeat 355 382 IPR002885 -
Glsi05g1045 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Glsi05g1045 829 Gene3D Tetratricopeptide repeat domain 725 826 IPR011990 GO:0005515
Glsi05g1045 829 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 142 512 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1045 332 822 Glycosyltransferase AT1G05670 29.234 7.63e-66 232
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1045 05 60318999 60323119 Glsi05g1045 05 60318999 60323119 ECH