Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1018 ATGCAATTTTTTGAGAAACAAATAACGTACTATAACTTTCAGGCTTGTAGCAGGCTGGTGTTCTTGTTTGTAGCACAGCCTGAACTTCCCATGGAGATCCATCCACCCGAAATTCACCAAGCTAGGTCTTCAGGTCCAGTTCTTGGGGAAGGACCCTTTAATGATGCTTCGATGTTTTCATCTGGAATGCCTGTTTCTGAGGAAACTCTTACTGGGTCCTCACCATCTTCGCATTCTGAAACCCTAAATGACCGTCCTTTGGTTCAGTCTTCACCAAATCAAATGGCTTCGATATCTTTACCTACTGAAGTCCAAGAAGGTCAGATTATTGCTCCTTTGCCATCCGATAGAAGAGTCTCCCCTCCCAATTCAGATTCCAAAACCCTAGATGACTATCCTCAGTTCCCCTCCTTTCCTAATCCTAATCCTAATGGGTCGTTTAGTACTAGAAAGACCCTAGATGCTTGTTCACCTGCTGAATCAGCAGAAACCCCAAATCATCTGCCTCTTTCGCCTTCGGTGCATAAGTCACCAACTCTTGAAGGGTCTTTACCGTCCATGCCAACCGCAGCCGAGAATAATTATTCCCACACATTTTGTGATTCCGATAGAGAAGTTAAAGAAGATCCAGAGCCAATTCGATTACTAAACGGTTTATCGTATTATCCGTCTTTATCATCTCCCAAACAGTGGCCTTCGTGGTCCTCATCTTCATCGCGGTCCTCCAAAGAAGCATGGAATTCCGTTCTTACTCCTGAAGAACTCTGGCTAACTTCTGAAGATACCGGGATACCTTTGAAAGATACGTTTTTTGCTTCGGGAATTGTACCTTTCACCGTGGGTGCCGGGCTTGCAAATCTTGGTAACACATGCTTTATCAATGCTATCCTGCAATGCTTTACTCATACCGTGCCACTAATTCATAGTCTCCGTTCTTGCAGTCATTCTGCTCCTTGTGAAGGTGGTATTGATGGGTTCTGTGTTCTTTGTGCTCTTCGTGACCACATTGAACATTCATTAACGTCCGCAGGAGGAATTCTTTCACCTTTGAAACTTGTTGACAATTTGAACTATTTTTCATCTTTTTTTAGGAGATACCAGCAGGAGGATGCCCATGAATTTATGCAGTGCGTCTTAGATAAACTGGAAATATGTTTTCTAGATTTAAAGGAAAAGAGTAAGAGTTGTGAAGAAGTTGACAATCTAGTAGAGAAAATATTTGGAGGTCGCCTCATTAGCAAACTTCGATGTTGTAACTGTGGCCACTGTTCTGACACTTATGAGCCTCTGATTGACTTTAGTTTGGAGATAGAAAATGTTGATACCCTTCCAAGTGCTCTGGAATCTTTCACCAAGGTGGAAAATATTGATGCAAAGTTTAGATGTGATAACTGCAACGAAGAAGTATCCATGGAGAAGCAGCTTATTTTAGATCAGACACCTTCAGTTGCGGCATTTCATTTAAAGAGATTTAAGACAGATGGCACCTATGTTGAAAAGATTGATAATCATGTGGAATTTCCTCTGGAATTGGACTTGCAGCCTTACACCAGCTGTGACCAAAGCAGTAATGTAGCATTGAAATATGATTTATATGCTATTGTTGTACATGTTGGGTTTTCATCTACTTCTGGGCATTACTTTTGCTTTGTTCGCTCTGCACCTGACATGTGGTATAAGTTGGATGACTCCAAGGATTGTGTTTTGTTTCTCCTTATCACATCCATCTACCTGAGGTTAGCTGGAACCTTTCAAAGTAGAAGTTGTATACATTTTTGGGATTCAGTTATTGCCATAAGCATATCAGCATATGGTATTGCTTTGCAAGAGGTTTTTCTCAAGGGCCTTCCCCTCTTTTTCTTTCTTCCTGGTGTTCAGTCCCACGTAACTGTCAACTTATTGTTAGATGCAAATGTTACTAGGGTCCTAGTAGATTCTGTGCTTTCTCAGGAGGCATACATATTGTTTTATGCACGACAAGGTACACCGTGGTTTTCAAGTATTATGGAAGCTTCAAGGCCATGCTTGGGTACAAACATTTTGAATACATCTCCCAAGTCAGTTTTAGACAATGTTGACAGCTTGCATAGCACAAATCCTACTATAACAAATTTTGCAAGTTGTGATGCCAGTGAATCCAGAGAATTTTCTAAGCAGTTGTCTGATTATTCTTGTGGAGTAAGAAATGAAGTGCCTGAGGTCAATGATATTATAGATGCTTCTCATGGCCCCAGACAGTATCATTCTGAGTTAAATCAGGATAGTGTTGGTTTTAATTGCTCTGGAGATCTGACCACCCATGCCCAAGTGCCATGCAATGAGAGAAATGGTACCCTGTCCTCTCTTGATAAAAACAATTGCCATCAGTTGGTTGTTGATTTTGGAGAGAACGATGGTTTCCATCCTTTAACTCCCCCTAGCTCCCCTGGTCCTGATGCATATTCTCCAGATACGAGTTATCGCATCCCACGTGATCATTTGAAGAGGGAGACCCGTGAAAACTGTAAAAGACCATTAAATAAGTCTGCGGAGGATTCTCAGAGAAAAGAAGCTATGAGATATCTTAGCAAGAGTGTGCCTAGTGGCAGGAGATCTAAACTACTTATGGATGCGTTGAATGAGCCCCTTAGTGAAGGTTCTTCAAACAAGAGGAGAAAAAAAAGGGATTCAGTATCGTAAATGTATAGCTTGAGGCATTTTGATGGTCTACTAAAACTTGTAGCACGTTACCAGGCTGAACTCGTCAGCCTGCAATTTCGCATCACGATGGATTCTTTTGACACTAGTCTTGCCCTCTACAAATTGAAGATTGTTTTAGACGCTCTGGTAAAGTATAAACAGACTAGACTAGAAGCAGAGAATAATGTCATGATATTGCAATTATCAATGTTGGAGAACATATTTATCGTTACATATAAATGA 2922 0.4107 MQFFEKQITYYNFQACSRLVFLFVAQPELPMEIHPPEIHQARSSGPVLGEGPFNDASMFSSGMPVSEETLTGSSPSSHSETLNDRPLVQSSPNQMASISLPTEVQEGQIIAPLPSDRRVSPPNSDSKTLDDYPQFPSFPNPNPNGSFSTRKTLDACSPAESAETPNHLPLSPSVHKSPTLEGSLPSMPTAAENNYSHTFCDSDREVKEDPEPIRLLNGLSYYPSLSSPKQWPSWSSSSSRSSKEAWNSVLTPEELWLTSEDTGIPLKDTFFASGIVPFTVGAGLANLGNTCFINAILQCFTHTVPLIHSLRSCSHSAPCEGGIDGFCVLCALRDHIEHSLTSAGGILSPLKLVDNLNYFSSFFRRYQQEDAHEFMQCVLDKLEICFLDLKEKSKSCEEVDNLVEKIFGGRLISKLRCCNCGHCSDTYEPLIDFSLEIENVDTLPSALESFTKVENIDAKFRCDNCNEEVSMEKQLILDQTPSVAAFHLKRFKTDGTYVEKIDNHVEFPLELDLQPYTSCDQSSNVALKYDLYAIVVHVGFSSTSGHYFCFVRSAPDMWYKLDDSKDCVLFLLITSIYLRLAGTFQSRSCIHFWDSVIAISISAYGIALQEVFLKGLPLFFFLPGVQSHVTVNLLLDANVTRVLVDSVLSQEAYILFYARQGTPWFSSIMEASRPCLGTNILNTSPKSVLDNVDSLHSTNPTITNFASCDASESREFSKQLSDYSCGVRNEVPEVNDIIDASHGPRQYHSELNQDSVGFNCSGDLTTHAQVPCNERNGTLSSLDKNNCHQLVVDFGENDGFHPLTPPSSPGPDAYSPDTSYRIPRDHLKRETRENCKRPLNKSAEDSQRKEAMRYLSKSVPSGRRSKLLMDALNEPLSEGSSNKRRKKRDSVSXMYSLRHFDGLLKLVARYQAELVSLQFRITMDSFDTSLALYKLKIVLDALVKYKQTRLEAENNVMILQLSMLENIFIVTYK 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1018 973 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 282 596 IPR028889 -
Glsi05g1018 973 Gene3D Cysteine proteinases 280 664 - -
Glsi05g1018 973 MobiDBLite consensus disorder prediction 796 888 - -
Glsi05g1018 973 SUPERFAMILY Cysteine proteinases 281 565 IPR038765 -
Glsi05g1018 973 MobiDBLite consensus disorder prediction 164 197 - -
Glsi05g1018 973 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 529 547 IPR018200 GO:0004843|GO:0006511
Glsi05g1018 973 FunFam Ubiquitin carboxyl-terminal hydrolase 20 278 569 - -
Glsi05g1018 973 MobiDBLite consensus disorder prediction 40 207 - -
Glsi05g1018 973 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 283 298 IPR018200 GO:0004843|GO:0006511
Glsi05g1018 973 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 133 660 - -
Glsi05g1018 973 MobiDBLite consensus disorder prediction 119 155 - -
Glsi05g1018 973 MobiDBLite consensus disorder prediction 59 104 - -
Glsi05g1018 973 MobiDBLite consensus disorder prediction 819 852 - -
Glsi05g1018 973 Pfam Ubiquitin carboxyl-terminal hydrolase 283 565 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1018 Glsi-ChrGlsi05 60146109 60152884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1018 283 588 Miscellaneous Gene Families AT4G31670 32.492 3.07e-43 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1018 05 60146109 60152884 Glsi05g1018 05 60146109 60152884 ECH