Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0885 ATGAAGAGAAACACTAGTTCTTCTCTACTCTTTTTCCTGTTCTTATTGATCATTGTCTTTGTCACCTCTTCTATCACTTCTGTGGAGGCAAGGAAGAGTCACAACAATGAGAAGACAAAATTTCATCATAAACATCAGAAAGACAATAACAATGGCCGTGCTCCTGCTGGCTCAGATTATTCTCCAAGTCCTGCGCCTGCTCCAACCCAAATGAGCATTTTTGACGTTGTCTCCTTTGGAGCCAAGGGCAATGGAGTTTCTGATGATTCAAAGGCTCTTCTAGCAGCATGGAAAGGTGCCTGCAAAGTTGCTGGTGCTACAGTGAAAATTCCTGCAGAACTCAGGTTCCTCATCAAGCCCATTACTCTACAAGGCCCTTGTATTCCTCAACTTACTCTTCAGATAGATGGGACTCTATTGGCTCCTTCTGAAGCATCTTCCTGGGCAAAATCCAGTTTATTTCAGTGGATAAATTTCAAATGGGTCCACAACTTCACCATCCAAGGCTCTGGCACCATTGATGGCCAAGGCTATAACTGGTGGAGCTCCTCACAAATTTATCATATGCAGAAGAGATACTCCAAACAAATTCCAGGCATGAAACCCACTGCTATAAGATTTTATTCCAGCAACTATGTAACAGTTCGTGACATCAGAATCATTAGCAGTCCCCTATGTCATCTAAAATTTGACGGTTCAAAAGGGATCAAAGTCAATAACATTACAATTTCTTCCCCAGAGAATAGCCCAAATACTGATGGCATTCACTTGCAGAACACACATGATGTAGAAATTCAACATTCTGATATTGGAAGTGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAATATTCATGTTCACCACATTAACTGTGGCCCAGGACATGGTATAAGCTTAGGTGGATTAGGGAAAGATAGAAGTGTGGCATGTGTTTCCAACATCATGGTTAATGATGTCTCAATGCAAAACACTTTATATGGAGTACGGATCAAAACGTGGCAGGGTGGCATTGGTATGGTAAAGAATGTTTCATTCTCCAGAATCCAAGTCCATGATGTGAAGGTTCCAATAATGATAGACCAATACTATTGTGACAAGCATGTCTGCAAGAACCAGACCAAAAACGTGGCGATTTCTGGAGTCAAGTTTCATCAAATATCTGGAACGTATGCAGTACAACCTATCCATCTAGCTTGTAGCAATTCCATACCCTGCACTGACGTTGATCTAACTGATATCCAGCTGAGGCCTTCACTCAATTATAGAGGCTTTCAACGAGCTTTGTGTTGGAACTCTTACGGGAAATCACGAGGCCCCTTGCTACCATCAAACATTGATTATTGCTTGAGAGGTGGTGGGGATTCCATCAAGAGGATTGCTAGGTCACATGATAGTGTATGTTACTAA 1413 0.4197 MKRNTSSSLLFFLFLLIIVFVTSSITSVEARKSHNNEKTKFHHKHQKDNNNGRAPAGSDYSPSPAPAPTQMSIFDVVSFGAKGNGVSDDSKALLAAWKGACKVAGATVKIPAELRFLIKPITLQGPCIPQLTLQIDGTLLAPSEASSWAKSSLFQWINFKWVHNFTIQGSGTIDGQGYNWWSSSQIYHMQKRYSKQIPGMKPTAIRFYSSNYVTVRDIRIISSPLCHLKFDGSKGIKVNNITISSPENSPNTDGIHLQNTHDVEIQHSDIGSGDDCVSIQTGCSNIHVHHINCGPGHGISLGGLGKDRSVACVSNIMVNDVSMQNTLYGVRIKTWQGGIGMVKNVSFSRIQVHDVKVPIMIDQYYCDKHVCKNQTKNVAISGVKFHQISGTYAVQPIHLACSNSIPCTDVDLTDIQLRPSLNYRGFQRALCWNSYGKSRGPLLPSNIDYCLRGGGDSIKRIARSHDSVCY 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0885 470 MobiDBLite consensus disorder prediction 32 50 - -
Glsi05g0885 470 PANTHER - 72 437 - -
Glsi05g0885 470 Pfam Glycosyl hydrolases family 28 106 418 IPR000743 GO:0004650|GO:0005975
Glsi05g0885 470 MobiDBLite consensus disorder prediction 51 65 - -
Glsi05g0885 470 SUPERFAMILY Pectin lyase-like 66 446 IPR011050 -
Glsi05g0885 470 MobiDBLite consensus disorder prediction 32 65 - -
Glsi05g0885 470 FunFam polygalacturonase At1g48100 62 453 - -
Glsi05g0885 470 Gene3D - 62 447 IPR012334 -
Glsi05g0885 470 SMART pbh1 233 259 IPR006626 -
Glsi05g0885 470 SMART pbh1 313 334 IPR006626 -
Glsi05g0885 470 SMART pbh1 283 303 IPR006626 -
Glsi05g0885 470 SMART pbh1 260 281 IPR006626 -
Glsi05g0885 470 SMART pbh1 342 363 IPR006626 -
Glsi05g0885 470 SMART pbh1 375 396 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0885 Glsi-ChrGlsi05 59105453 59108460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0885 1 469 Glycoside Hydrolase AT3G26610 62.343 0.0 609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0885 05 59105453 59108460 Glsi05g0885 05 59105453 59108460 ECH