Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0851 ATGGCGGATTCCGCCTCTTCTCCTGCAATTCCCGAAGCCAACCCGCAACACTCCGATTCGGGCGCTCCCAATTCTCATCAGAATCAACCCGATCCTGTTGCAGCCTCCACATCGCCAGCAATACAACGTCCATCTTCAACTCCACCATCCTCTGCGCCCGTCGTTGCAGTAAACCCTAACTCGAATCCATCATTAGCATCAGCACCGCTACCGCCGCCGCCTGCTATTTCATATGCAGCGGCGGCGGCACCGCCACCCCAAGTCTCAGGCGGAGCCATTGCCCCTCCGGCTGTGCCCTCCTTCAGGCCAGGACCTCCGCAGTTCTCTCCCTTACCCAATCCCCTTAACTATCAAAACCCTGCTGTTCAGCCGCCTGGTGTGAGTTCTGCCTCCGCAATGACTCCCGGCGTGCCTAGTGGTACCGGAGCGGTTCCAGTGTCCATGCCGCAAGTGCCGGCGCAGATGCAACCGATGATGATGCCTTATCAGATTCCTGGTCAGCCCCCTAATCCGGCCTTGAGACCGTATGCCCCGATACCCAATGGTTATACAACCATTCCATCCGCTCCACAAGGGACTATGCCTCCCCCGGGAATGCCTCGTTATCCTCCACCATATGGAACTATTGTTCGTCCTTCATATCCTCCACGCCCTCCTGGAGCTGTTAATATGCTTCCAGCTGTATCACGCCCTCCTGTTGCCGGGATCCCTGCAGTTCGCCCTTTCATTCCCCCTGTGGTTAGACCAATGGTTGCTCCTAGTGTTACTCCAGCTGAGAAACCACAAACTACAGTTTATGTTGGCAAGATTGCACCAACGGTTGAAAATGAATTTATGCTTTCTCTACTTCAGTTATGTGGACCTGTCAAGAGTTGGAAACGTCCTCAAGATCCATCAAGTGGTACTCCTAAAGGCTATGGGTTTTGGGAGTTCGAGTCTGCTGAAGGGGTTCTTCGTGCCTTGCGTCTGCTTACTAAATTGAATATTGACGGGCAACAGTTAGTGGTCAATGTTAGTGAAGCTACAAGAGAATATCTGGAGCGTTATGTTGAGAAAAAAACTGAGAACTCAAAGAAAAAAGATACTCAGTCAGTTGGATCTGAAAAAGATGATGAGAGTGCACAACATCCTAATGCAAATGAGGATGGGAAGTCTGATGTGGAGCACTCAAAGAAAGATGACAATAATTCAGGGAACAAGGAAAATCATGATGCAACAAACTTTGGCATTGTTACTGATGAAGACAGGGAAGCTGATCAAGAGGCTTTAGAGAAGCTTACAAACATGATAGAGGAGAGGTTGAAGACCAGACCTTTGCCTCCACCTCCTGCACAGGCCTCTTCTGATGGCCCTGCAAATTTAACCTCAGAACAATCTGCAAAAACAAGAGATGGAGACTCTGATGCAGACACAGGGAATAATGAAGCAGCTGAAGATAAAAATGACAAGGAGACAAATAGTGACAACAAACCAACAAGTGAACATGATAGACCTGAGACCCCTGATAGAAGGTATGATAGGAGGAGCAGAGAGAAAGACCGAGATAGGGAACTAAAACGAGAAAAAGAAAGGGAACTTGAAAGATATGAAAGAGAAGCAGAGCGGGAACGCATTAGGAAAGAGAGAGAACAAAGGAGGAGGATTGAGGAGGCTGAGCGTCAGTATGAAGCATGTTTGAAGGAGTGGGAATATAGAGAAAGAGAGAAAGAGAAAGAACGTCAGTATGAAAAGGAGAAAGAGAAAGAAAGGGAACGCAAACGCAGAAAGGAGATACTTTATGATGAAGAGGATGAAGATGATGATTCAAGGAAGAGGTGGCGTAGAAGTGTGTTAGATGAGAAGAGAAAGAAAAGATTGCGTGAAAGGGACGATGATCTTGCTGACAGACTAAAAGAAGAGGAGGAAATTGCTGAGGCCAAGAGGAGGGATGAGGAGGATCAGCAACACAAGCGGCAGAGAGATGCATTGAGGCTTCTATCTGACCATGTAATGAATGGTGGTGAAAAAAGTATGGCTACTGAAGATATTATCAATGAAGCCAAAAGTATTGTTGCCGAACAAGATACTGCAGCTGACTATGGTTATGAAGGCCATATAGATGATGGTAATCCACTAAATGGCATCAATGATGAATCGACCATGGCATCAGTTGCTGCAACTGATACACTACAAGGTGGCACTGCCCCTGCAAAGAAGTTGGGTTTTGGTTTGGTTGGTTCTGGCAAAAGAACGACTGTCCCTTCCGTTTTCCATGAGGAGGAGGATGATGATGCACACAAGGATAAAAAGATGAGGCCTTTGGTTCCTATTGACTATTCAACTGAGGAGCTGCAGGCTGTTCAACCTACTGGCTCTGGGGCCCCACCCCCAAATTTGGCTGCAGCTGCAGAATTTGCCAAGCGTTTATCCAATGCCAATATCAAGGAAGACAAGCTAGACGGAGAACGAGATAGAAGTAGGCGTTCTAATGAGAAGTCTAACCACCGGGACAGGGACAGGGACAGGGACAGGCATAATGAAGATGGCAGTCACAACAAAGATGAAAGCAGGGAAAAGATTTCTGACCGTGACAGGGATCGAGACCGTGGGTTGGAGAAACCGAAGACATCAGATAACAAAAAGCTATTGGATGCAAAACAGTTGATTGATATGATACCAAAAACCAAGGAGGAGCTGTTCTCATATGAGATTAACTGGGCAGTGTATGACAAGCATCAGCTGCATGACAGAATGAGACCGTGGATATCAAAGAAGATCACAGAGTTCTTGGGGGAAGAAGAAACTACATTGGTAGATTACATTGTTTCAAGTACGCAGGAACACGTGAAAGCATCCCAGATGCTGGAGCTGCTTCAATCCATTTTAGATGACGAAGCTGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATTTTTGAAATAAAGAAGGTAGAGACCGGCCTTGCTATGAGGTCAAAGTCATGA 2964 0.4696 MADSASSPAIPEANPQHSDSGAPNSHQNQPDPVAASTSPAIQRPSSTPPSSAPVVAVNPNSNPSLASAPLPPPPAISYAAAAAPPPQVSGGAIAPPAVPSFRPGPPQFSPLPNPLNYQNPAVQPPGVSSASAMTPGVPSGTGAVPVSMPQVPAQMQPMMMPYQIPGQPPNPALRPYAPIPNGYTTIPSAPQGTMPPPGMPRYPPPYGTIVRPSYPPRPPGAVNMLPAVSRPPVAGIPAVRPFIPPVVRPMVAPSVTPAEKPQTTVYVGKIAPTVENEFMLSLLQLCGPVKSWKRPQDPSSGTPKGYGFWEFESAEGVLRALRLLTKLNIDGQQLVVNVSEATREYLERYVEKKTENSKKKDTQSVGSEKDDESAQHPNANEDGKSDVEHSKKDDNNSGNKENHDATNFGIVTDEDREADQEALEKLTNMIEERLKTRPLPPPPAQASSDGPANLTSEQSAKTRDGDSDADTGNNEAAEDKNDKETNSDNKPTSEHDRPETPDRRYDRRSREKDRDRELKREKERELERYEREAERERIRKEREQRRRIEEAERQYEACLKEWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDDDSRKRWRRSVLDEKRKKRLRERDDDLADRLKEEEEIAEAKRRDEEDQQHKRQRDALRLLSDHVMNGGEKSMATEDIINEAKSIVAEQDTAADYGYEGHIDDGNPLNGINDESTMASVAATDTLQGGTAPAKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTGSGAPPPNLAAAAEFAKRLSNANIKEDKLDGERDRSRRSNEKSNHRDRDRDRDRHNEDGSHNKDESREKISDRDRDRDRGLEKPKTSDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHQLHDRMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDDEAEMFVLKMWRMLIFEIKKVETGLAMRSKS 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0851 987 CDD RRM_RBM25 263 346 IPR034268 -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 461 550 - -
Glsi05g0851 987 Pfam PWI domain 910 973 IPR002483 GO:0006397
Glsi05g0851 987 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 334 IPR000504 GO:0003723
Glsi05g0851 987 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 341 IPR000504 GO:0003723
Glsi05g0851 987 MobiDBLite consensus disorder prediction 1 64 - -
Glsi05g0851 987 ProSiteProfiles PWI domain profile. 890 987 IPR002483 GO:0006397
Glsi05g0851 987 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 27 987 - -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 747 769 - -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 566 604 - -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 352 400 - -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 352 550 - -
Glsi05g0851 987 Coils Coil 512 561 - -
Glsi05g0851 987 SUPERFAMILY PWI domain 908 975 IPR036483 GO:0006397
Glsi05g0851 987 SUPERFAMILY RNA-binding domain, RBD 201 339 IPR035979 GO:0003676
Glsi05g0851 987 Coils Coil 564 592 - -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 803 872 - -
Glsi05g0851 987 SMART rrm1_1 264 337 IPR000504 GO:0003723
Glsi05g0851 987 MobiDBLite consensus disorder prediction 1 111 - -
Glsi05g0851 987 Gene3D - 255 375 IPR012677 -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 622 667 - -
Glsi05g0851 987 Coils Coil 616 650 - -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 733 872 - -
Glsi05g0851 987 FunFam RNA Binding Motif protein homolog 866 982 - -
Glsi05g0851 987 Gene3D PWI domain 866 983 - -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 65 80 - -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 622 658 - -
Glsi05g0851 987 MobiDBLite consensus disorder prediction 407 432 - -
Glsi05g0851 987 SMART pwi_2 903 976 IPR002483 GO:0006397
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0851 05 58878212 58885096 Glsi05g0851 05 58878212 58885096 ECH