Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0838 ATGAATCCCTTCTCTTCAGGGACCCGCTTGAGGGACATGATTCGGGCCATACGTGCTAGCAAAACTGCAGCAGAAGAACGTGCTGTTGTAAGAAAAGAGTGTGCTGCCATTCGTGCTTCAATTGATGAAAATGATCAATACTATAGGCATAGGAATCTGGCTAAGCTAATGTTTATACACATGCTTGGTTACCCAACACATTTTGGTCAAATGGAGTGCCTCAAGTTGATTGCATCTCCTGGATTTCCGGAGAAGAGAATAGGTTACCTTGGCCTCATGTTGCTTCTTGATGAAAGACAAGAGGTTTTAATGTTGGTCACGAACTCTTTGAAACAAGATCTTAATCACTCAAATCAGTATATAGTTGGACTTGCTCTTTGTGCTTTAGGAAACATTTGTTCAGCAGAAATGGCTCGCGATCTTGCTCCAGAGGTTGAGAGATTGCTGCAATTTCGGGATCCAAATATCCGGAAAAAGGCAACATTATGCTCTATAAGAATCATAAAGAAAGTTCCAGAGTTGGCAGAAAATTTTATTAGTCCTGCTGCTGCCTTACTTAAGGAGAAGCATCATGGAGTTTTGATCACTGGGGTTCAGCTTTGTACAGATCTGTGTAAAGTTAGCACAGAAGCCCTTGAACACTTTAGAATGAAATGCACAGAAGGTTTGGTCAGAACTCTCAAGGATCTAGTGAACAGTCCTTATGCGCCAGAGTATGATATTGCTGGCATCACAGATCCTTTTCTCCATATCAGATTGCTTAGGCTTTTGCGAGTGCTGGGTGAAGGTGATGCTGGTGCTAGTGACTTTATGAATGACATACTTGCCCAGGTGGCTTCCAAGACTGAGTCAAATAAAGTTGCAGGGAATGCCATTTTATATGAGTGTGTTCAAACAATCATGAGTATTGAAGATAATGGTGGCTTACGTGTGCTTGGCATCAATATCCTTGGAAGATTCTTATCAAACCGTGACAACAATATCAGATACGTTGCATTAAACATGCTGATGAAGGCTGTAGCAGTTGATGCTCAGGCAGTGCAGAGGCATCGAGCAACTATTCTGGAATGTGTAAAGGATTCAGATGCTTCAATTCAGAAAAGAGCCCTTGAACTTGTTTACGTTCTGGTAAATGAAAGTAGTGTGAAGCCCTTAACAAAAGAGCTAATTGATTATCTGGAAGTCAGTGATCAAGATTTCAGGGTTGACCTTACTGCCAAAATTTGCTCTATAGTTGCTAAGTTTTCCCCGGAGAAGATCTGGTACATTGATCAGATGCTCAGGGTTCTTTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCATGCCTTAATTGTTGTGATAAGCAATGCTTCTGAGCTTCATGGATATACAGTACGAGCATTATACAAGGCATTGCAAATATCATCTGAACAGGAAAGTCTTGTTCGAGTTGCAGTGTGGTGCATTGGAGAATATGGTGACATTCTAGTTAAAAATGTTGGAATGCTTGACATAGAAGATCCAATAACGGTGACTGAGTCAGATGCTGTGGATGTTTTAGAGATGGCTATAAAACGCCATGCATCAGATCTTACCACAAAAACGATGGCTTTGGTTGCCCTGTTGAAACTCTCTTCACGTTTCCCATCTTGTTCAGAGAGGATCAGGAATATAATCATTCAGTATAAAGGGAACCTTGTGCTTGAATTGCAGCAAAGATCTATTGAATTCAGTAAAATTATTGCAGAGCATCAAAATATTAGGTCTACACTTGTAGAAAGGATGCCAGTTTTGGATGAGGCAGCTTATATTGGTAGGAGGGCTGGTTCTATGCCAGGCACAGCTTCAACTCCAACAGGATCTTCAGTTAATCTTCCAAATGGAGTTGCCAAAGCTTCTGTGGCTCCTCTTGTGGATCTGCTTGATTTAAATTCAGACGATGCTCCTGCCCCTAGCTCTTCTGGCAGTGATTTTCTTCAGGACCTTCTTGGTATTGATTTGCCTCCAGCATTGCAACAGCCCGGTTCTAGTCAAGCTCCAAAAAGTGGCACAGATGTTCTATTGGATCTTTTGTCCATTGGATCACCTTCTGCACAAAGCAACTCATCTACAACAGACATTTTATCCTCCAGTACAAATAACAAAACACCAGTTTCACCATTGGATGATCTCTCATCTCTTTCACTTTCAGCAAGAGCAACTTCAAATGCTGGAGCTGCTCCTATGATGGATTTGTTGGATGGTCTTGCCCCCAGCCCACCAACAGAAAACAATGGACCAGTTTATCCATCTATAACTGCATTTGAGAGCAGCTCCTTGAGGGTGACATTCAATTTCTCCAAACAACCAGGAAACCCACAAATAACAATCATCCAAGCTACCTTTACGAATTTGACATCTAATGCATATACAGATTTTGTTTTCCAGGCTGCAGTTCCAAAGTTTCTTCAATTGCACTTAGATCCGGCTAGCAGCAATACTCTCCCTGCTAGTGGTAATGGATCCATCACGCAAAATTTGAGAGTTACTAATAGCCAACATGGAAAGAAATCTCTTATCATGCGCACAAGGATAGCATACAAGATAAATGGCAAGGACACGCTGGAGGAAGGACAGATCAATAATTTTCCTCGTGATTTATGA 2628 0.4144 MNPFSSGTRLRDMIRAIRASKTAAEERAVVRKECAAIRASIDENDQYYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKATLCSIRIIKKVPELAENFISPAAALLKEKHHGVLITGVQLCTDLCKVSTEALEHFRMKCTEGLVRTLKDLVNSPYAPEYDIAGITDPFLHIRLLRLLRVLGEGDAGASDFMNDILAQVASKTESNKVAGNAILYECVQTIMSIEDNGGLRVLGINILGRFLSNRDNNIRYVALNMLMKAVAVDAQAVQRHRATILECVKDSDASIQKRALELVYVLVNESSVKPLTKELIDYLEVSDQDFRVDLTAKICSIVAKFSPEKIWYIDQMLRVLSEAGNFVKDEVWHALIVVISNASELHGYTVRALYKALQISSEQESLVRVAVWCIGEYGDILVKNVGMLDIEDPITVTESDAVDVLEMAIKRHASDLTTKTMALVALLKLSSRFPSCSERIRNIIIQYKGNLVLELQQRSIEFSKIIAEHQNIRSTLVERMPVLDEAAYIGRRAGSMPGTASTPTGSSVNLPNGVAKASVAPLVDLLDLNSDDAPAPSSSGSDFLQDLLGIDLPPALQQPGSSQAPKSGTDVLLDLLSIGSPSAQSNSSTTDILSSSTNNKTPVSPLDDLSSLSLSARATSNAGAAPMMDLLDGLAPSPPTENNGPVYPSITAFESSSLRVTFNFSKQPGNPQITIIQATFTNLTSNAYTDFVFQAAVPKFLQLHLDPASSNTLPASGNGSITQNLRVTNSQHGKKSLIMRTRIAYKINGKDTLEEGQINNFPRDL 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0838 875 SUPERFAMILY ARM repeat 25 591 IPR016024 -
Glsi05g0838 875 Gene3D - 742 874 - -
Glsi05g0838 875 FunFam AP-1 complex subunit gamma 2 594 - -
Glsi05g0838 875 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 11 863 - -
Glsi05g0838 875 Pfam Adaptin N terminal region 27 578 IPR002553 GO:0006886|GO:0016192|GO:0030117
Glsi05g0838 875 SUPERFAMILY Clathrin adaptor appendage domain 733 874 IPR013041 -
Glsi05g0838 875 SMART alpha_adaptinc2 752 872 IPR008152 GO:0006886|GO:0016192
Glsi05g0838 875 PIRSF AP1_gamma 6 875 IPR017107 GO:0005794|GO:0016192|GO:0030121
Glsi05g0838 875 MobiDBLite consensus disorder prediction 690 718 - -
Glsi05g0838 875 Gene3D - 2 594 IPR011989 -
Glsi05g0838 875 Pfam Adaptin C-terminal domain 758 872 IPR008152 GO:0006886|GO:0016192
Glsi05g0838 875 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 755 872 IPR008153 -
Glsi05g0838 875 FunFam AP-1 complex subunit gamma 745 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0838 Glsi-ChrGlsi05 58759402 58779275 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0838 05 58759402 58779275 Glsi05g0838 05 58759402 58779275 ECH