Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0836 ATGCTATGCTATGCAACTCTGATCCGCTTCCGCCGTTACGCTTCTTCGCCTCCACCATTTTCCCCTTCTCTGCTGCCTAAAGCTCTGCGCCTTTTCTCCTCCTCCGCATCGCAAGCATCAGCAGCCATGGTGGTGGCTCATCCCAAAGACGAAGCCTACCTGAACACCGTCATACCCAAGCGTATCCAACTCTTCCAGCTCATACAAGCTCAGCAACATGCTCATCGCCTATCCCTCTCCGCCGGTCCCATCAAGATCACTTTGCCGGATAAGAATGTCAAGGAAGGGAAGAAGTGGGTGACCACGCCCTTGGATATTGCCAAAGAGATTTCGAAGAATTTGGCTGCAAACGCATTGATTGCCAAAGTGAATGGGGTCTTATGGGATTTGACAAGGCCTTTCGAAGGCGACTGTGAACTTCAGATTTTCAAATTTGATGACGATGAGGGACGTGATACTTTCTGGCATTCCAGTGCTCACATTCTAGGGCAGGCCCTTGAGGTGGAGTATGGATGTAAGCTCTGCATTGGGCCTTGCACCACTAGAGGAGAGGGATTCTATTATGATGCATTTTATGGTGACTTGAGTTTGAATGATGATCACTTTAAGCAGATCGAATCAGGGGCATTGAAGGCTGTTGCGGAAAAACAACCATTTGAACGTATTGAAGTATCAAGGGATCAGGCACTTGAAATTTTTTCTGATAATAAATTTAAGGTTGAAATCATCAATGATTTGCCTGCAGACAAAACAATCACAGTATACAGATGTGGTCCCTTGGTTGATTTGTGTCGCGGACCACATATACCTAACACATCCTTTGTGAAAGCACTTGCATGTCTAAAGGCTTCATCAGCATATTGGAGAGGAGACAAAGATCGGGAAAGTTTACAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGAGTTTGAAGGAATATATCAATCGGTTGGAAGAGGCTAAAAAGTATGACCACAGGTTGTTGGGTGTAAAACAGGAGCTTATTCTTCATCATGAGTGGAGCCCAGGAAGTTGGTTTTTTCTTCCACATGGGACACGGATTTACAACAAATTAGTGGAGTTTATTCGAAATCAATATAGAGAAAGAGGTTACCAAGAGGTTATATCTCCAAATGTATATAATATGGATCTCTGGGAACAATCTGGACATGCTGCAAACTACAAGGATAATATGTTTGTCTTTGAGATTGAAAAGCAAGAGTTTGGGCTAAAACCAATGAATTGCCCAGGACACTGCTTGATGTTTAAACACAGAGTTCGCTCATATAGAGAACTTCCTCTTCGACTGGCTGATTTTGGGGTTTTACATCGGAATGAGGCTAGTGGCGCCTTGAGTGGATTGACACGTGTTAGGAGATTTCAACAGGATGATGCCCATATCTTCTGTAGGGAGTCCCAGATAAAGGATGAAGTGAGAAGTGGCTTGGATTTCATCGATTATACCTATAACATATTTGGTTTTACCTATGATTTGAAGCTTTCTACGAGGCCAGAGAAATACCTTGGAGATTTAGGAACATGGGAGAAGGCTGAAAATGCTCTTAAAGAAGCTTTAGATGATTTTGGGAAGTCTTGGCAGATAGATGAAGGAGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTTTCTGATGCATTGAACAGAAAATTCCAGTGTGCAACTTTGCAGCTCGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAAAGACCTGTTATGATACACAGAGCTATTCTAGGATCTGTTGAACGCATGTTTGCTATATTATTGGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCCATTCTGTGCCCTGTGTCAGAGAAATCACAGTCTTATGCAATACAGGTGCGAGATAAGATCCATCAAGCAGGTTATCATGTTGACGCTGACACAACTGATAGGAAGATTCAAAAGAAGGTGCGAGAAGCTCAGTTAGCACAGTACAACTATATATTGGTTGTTGGAGAGGAGGAAGCTAAGACCGGACAGGTTAGTGTACGGGTTAGAGATAACTCAGACCATAAAGTTATGAGTATTGAGAGCCTACTCAAACACTTCAGTGATGAAATTGCAGCTTTCCATTGA 2157 0.4307 MLCYATLIRFRRYASSPPPFSPSLLPKALRLFSSSASQASAAMVVAHPKDEAYLNTVIPKRIQLFQLIQAQQHAHRLSLSAGPIKITLPDKNVKEGKKWVTTPLDIAKEISKNLAANALIAKVNGVLWDLTRPFEGDCELQIFKFDDDEGRDTFWHSSAHILGQALEVEYGCKLCIGPCTTRGEGFYYDAFYGDLSLNDDHFKQIESGALKAVAEKQPFERIEVSRDQALEIFSDNKFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKALACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYINRLEEAKKYDHRLLGVKQELILHHEWSPGSWFFLPHGTRIYNKLVEFIRNQYRERGYQEVISPNVYNMDLWEQSGHAANYKDNMFVFEIEKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRLADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRSGLDFIDYTYNIFGFTYDLKLSTRPEKYLGDLGTWEKAENALKEALDDFGKSWQIDEGDGAFYGPKIDISVSDALNRKFQCATLQLDFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQSYAIQVRDKIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVSVRVRDNSDHKVMSIESLLKHFSDEIAAFH 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0836 718 NCBIfam threonine--tRNA ligase 155 712 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Glsi05g0836 718 Hamap Threonine--tRNA ligase [thrS]. 149 716 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Glsi05g0836 718 Pfam Anticodon binding domain 623 711 IPR004154 -
Glsi05g0836 718 FunFam Threonine--tRNA ligase mitochondrial 1 615 718 - -
Glsi05g0836 718 FunFam Threonine--tRNA ligase mitochondrial 1 305 433 - -
Glsi05g0836 718 SUPERFAMILY ThrRS/AlaRS common domain 146 323 IPR018163 GO:0000166
Glsi05g0836 718 CDD TGS_ThrRS 84 149 - -
Glsi05g0836 718 SUPERFAMILY Class II aaRS ABD-related 609 714 - -
Glsi05g0836 718 CDD ThrRS_core 325 621 IPR033728 -
Glsi05g0836 718 Gene3D - 614 717 IPR036621 -
Glsi05g0836 718 Gene3D Bira Bifunctional Protein; Domain 2 305 613 IPR045864 -
Glsi05g0836 718 FunFam Probable threonine--tRNA ligase, cytoplasmic 440 614 - -
Glsi05g0836 718 SMART tRNA_SAD_4 252 301 IPR012947 GO:0004812|GO:0005524|GO:0043039
Glsi05g0836 718 ProSiteProfiles TGS domain profile. 82 144 IPR004095 -
Glsi05g0836 718 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 350 616 IPR006195 -
Glsi05g0836 718 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 252 301 IPR012947 GO:0004812|GO:0005524|GO:0043039
Glsi05g0836 718 FunFam Threonine--tRNA ligase, cytoplasmic 82 143 - -
Glsi05g0836 718 PANTHER THREONINE-TRNA LIGASE 55 717 - -
Glsi05g0836 718 SUPERFAMILY Class II aaRS and biotin synthetases 325 608 IPR045864 -
Glsi05g0836 718 PRINTS Threonyl-tRNA synthetase signature 616 628 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Glsi05g0836 718 PRINTS Threonyl-tRNA synthetase signature 545 573 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Glsi05g0836 718 PRINTS Threonyl-tRNA synthetase signature 411 439 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Glsi05g0836 718 PRINTS Threonyl-tRNA synthetase signature 444 467 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Glsi05g0836 718 PRINTS Threonyl-tRNA synthetase signature 589 602 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Glsi05g0836 718 FunFam Threonyl-tRNA synthetase, mitochondrial 148 305 - -
Glsi05g0836 718 Gene3D - 82 143 IPR012675 -
Glsi05g0836 718 SUPERFAMILY TGS-like 84 144 IPR012676 -
Glsi05g0836 718 Pfam TGS domain 84 144 IPR004095 -
Glsi05g0836 718 CDD ThrRS_anticodon 621 710 IPR047246 -
Glsi05g0836 718 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 402 611 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Glsi05g0836 718 Gene3D - 147 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0836 Glsi-ChrGlsi05 58732383 58742014 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0836 05 58732383 58742014 Glsi05g0836 05 58732383 58742014 ECH