Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0399 ATGCCGGTTAAGGATGACAACTTCGATAAAGACAAGTGCTTGGAGCTTTTTTTGAAGATCGGTTTAGATGAGCGGACGGCTCGGAACACCATTGCTAACAATAAAGTTACAGCCAATCTTACTGCTGTCATAAATGAGGCCGGTGTTACCGATGGATGTAGTCGGACAGTAGGAAATCTCCTGTACACGGTTGCAACAAAGTATCCAGCAAATGCCTTGCGGCATCACTCAACATTGCTTCAATACATTGTTTCATGGAAGATAAAGACAACCGTGCAATTAGATGCAGCACTATCCTTTCTTGCTACTACGGGCTTGGAGAATCTTGATTTGAAAAAGTTTGAAGAAGCTTGTGGCGTTGGTATTGAGGTTTCAATAGAAGAAATTAAACAAACAGTGAATGAAGTTTTTGAAGAGAATAAGGCTAAAATTGTGGAGCTACGCTATCGAACAAATGTGGGTGAGTTACTAGGACATATGCGGAAGAGGCAACCATGGGCTGATGCAAAAGTTGTCAAGCAACTCGTTGATGCAAAATTATATGAGCTACTTGGTGAAAGGACAGCAGCAGATGATGAAAAACCTTCAAGAAAGAAGAAAGAGAAGCCTGCTAAAGTAGAGGATAAGGTAACTTCTGTTCCTACTCCTGAAAATCCACCTGAAGAAGATGTGAATCCATTTATGATATTCCCCCATCCAGAGGAAAATTTGAAGGTGCATACTGAAGTACCTTTTAGTGATGGTAGTATTCTGAGGTGCTGCAATACAAAGGAGCTGCTTGACAAACACTTGAAAGCTAAAAAGGAACTTCTTGACAGGCACTTAAAAGATAAAAAAGAGCTTCTTAACAAACACTTAAAAGCAGGTGTTGGGAGTGTTATTACCCGCTTTCCACCTGAACCAAATGGATACCTACATATTGGTCATGCCAAGGCAATGTTTATTGACTTTGGATTGGCAAAAGATAGAGGTGGAGGCTGCTACTTGAGGTATGATGATACAAATCCTGAAGCAGAAAAGAAAGAATATATTGATCACATTGAAGAAATTGTCAGATGGATGGGTTGGGAACCATTCAAGATTACTTACACCAGTGATTACTTCCAAGAACTGTATGAATTAGCAGTAGAGCTGACAAGAAGGGGCCATGCATATGTTGATCATCAGACACCTGATGAGATAAAGGAGTATAGGGAGAAGAAAATGAACAGTCCTTGGAGGGACAGACCAATTGCAGAATCATTGAAACTCTTTGAGGATATGAGGCGTGGTCTTATTGAAGAAGGGAAAGCGACACTTAGAATGAAACAAGACATGCAGAGTGATAATTACAATATGTACGACCTTATTGCATACCGTATTAAGTTCACTCCTCACCCCCACGCTGGAGACAAGTGGTGTATCTACCCCAGTTATGACTATGCTCACTGCATTGTGGATTCTCTTGAGAATGTCACACATTCATTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTATTGCATGCGTTGAGCCTTTACCAACCTTATGTATGGGAATATTCAAGGTTGAATGTCTCAAACACAGTTATGTCAAAGCGTAAGCTAAATCGTCTAGTGATGGAGAAGTGGGTTGATGGCTGGAATGATCCTCGTCTGATGACACTAGCAGGTTTGCGGCGCAGAGGCATTACTCCTACAGCAATCAATGCTTTTATTCGGGGAGTAGGAATCACTAGAAGTGATGGCACTTTGATATCTGTGGAACGCCTTGAGTATCATGTTAGGGAAGAACTGAACAGAGAAGCTCCTCGTACAATGGTTGTCCTACATCCACTCAAGGTGGTTATTACTAACCTGGAAGCCAGCTCAACAATTGAGGTTGATGCGAAGAAATGGCCTGATGCTAAATCTGATGACGCATCTGCTTTCTACAAGATTCCATTTTCCAATATTGTGTATATTGAACGTTCAGATTTTCGTATGCAAGATTCAAAAGATTATTTTGGTCTTGCTCCTGGTAAATCTGTGATACTCAGATATGCATTTCCTATAAAGTGCACAGAAGTTATTCTAGCTGATGATAATGAGACTATTCTTGAAATCCGAGCTGAGTATGATCCTTCAAAGAAGACAAAGCCTAAGGGTGTTCTTCATTGGGTTGCTCAACCTTCCCCCGGAGTTGATCCATTTAAGGTGGAAATCAGGTTGTTTGAGAAGCTATTCCTATCAGAGAATCCTGCTGAACTAGACAACTGGCTTGGCGATCTAAACCCCCAGTCCAAAATGGTAGTTCCTAATGCATTTGGTGTGCCCTTGCTCCAGTATGCGAAAGTTGGAGATAGGTTCCAATTTGAAAGATTAGGCTATTTTGCCGTGGACCAGGACTCCACTCCTGAAAAACTTGTTTTTAATCGGACAGTCACCTTAAGAGACAGCTATACTAAAGGTGGGAAGTAG 2451 0.4125 MPVKDDNFDKDKCLELFLKIGLDERTARNTIANNKVTANLTAVINEAGVTDGCSRTVGNLLYTVATKYPANALRHHSTLLQYIVSWKIKTTVQLDAALSFLATTGLENLDLKKFEEACGVGIEVSIEEIKQTVNEVFEENKAKIVELRYRTNVGELLGHMRKRQPWADAKVVKQLVDAKLYELLGERTAADDEKPSRKKKEKPAKVEDKVTSVPTPENPPEEDVNPFMIFPHPEENLKVHTEVPFSDGSILRCCNTKELLDKHLKAKKELLDRHLKDKKELLNKHLKAGVGSVITRFPPEPNGYLHIGHAKAMFIDFGLAKDRGGGCYLRYDDTNPEAEKKEYIDHIEEIVRWMGWEPFKITYTSDYFQELYELAVELTRRGHAYVDHQTPDEIKEYREKKMNSPWRDRPIAESLKLFEDMRRGLIEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENVTHSLCTLEFETRRASYYWLLHALSLYQPYVWEYSRLNVSNTVMSKRKLNRLVMEKWVDGWNDPRLMTLAGLRRRGITPTAINAFIRGVGITRSDGTLISVERLEYHVREELNREAPRTMVVLHPLKVVITNLEASSTIEVDAKKWPDAKSDDASAFYKIPFSNIVYIERSDFRMQDSKDYFGLAPGKSVILRYAFPIKCTEVILADDNETILEIRAEYDPSKKTKPKGVLHWVAQPSPGVDPFKVEIRLFEKLFLSENPAELDNWLGDLNPQSKMVVPNAFGVPLLQYAKVGDRFQFERLGYFAVDQDSTPEKLVFNRTVTLRDSYTKGGK 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0399 816 Gene3D Ribosomal Protein L25; Chain P 604 723 IPR020056 -
Glsi05g0399 816 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 600 791 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Glsi05g0399 816 FunFam Glutamine--tRNA ligase cytoplasmic 259 603 - -
Glsi05g0399 816 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 299 310 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Glsi05g0399 816 PANTHER GLUTAMINE-TRNA LIGASE 19 810 - -
Glsi05g0399 816 NCBIfam glutamine--tRNA ligase 293 813 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Glsi05g0399 816 SUPERFAMILY Ribosomal protein L25-like 600 810 IPR011035 GO:0006412
Glsi05g0399 816 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 169 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Glsi05g0399 816 CDD GlnRS_core 293 602 - -
Glsi05g0399 816 FunFam Glutamine--tRNA ligase 604 723 - -
Glsi05g0399 816 MobiDBLite consensus disorder prediction 189 208 - -
Glsi05g0399 816 Gene3D - 8 122 IPR042558 -
Glsi05g0399 816 Gene3D - 123 192 IPR042559 -
Glsi05g0399 816 FunFam Glutamine--tRNA ligase cytoplasmic 124 192 - -
Glsi05g0399 816 Coils Coil 264 284 - -
Glsi05g0399 816 SUPERFAMILY Nucleotidylyl transferase 293 606 - -
Glsi05g0399 816 Pfam tRNA synthetases class I (E and Q), catalytic domain 293 597 IPR020058 GO:0004812|GO:0005524|GO:0043039
Glsi05g0399 816 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 172 243 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Glsi05g0399 816 FunFam Glutamine--tRNA ligase cytoplasmic 724 809 - -
Glsi05g0399 816 Gene3D Ribosomal Protein L25; Chain P 725 809 IPR020056 -
Glsi05g0399 816 PRINTS Glutamyl-tRNA synthetase signature 325 338 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Glsi05g0399 816 PRINTS Glutamyl-tRNA synthetase signature 296 308 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Glsi05g0399 816 PRINTS Glutamyl-tRNA synthetase signature 470 480 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Glsi05g0399 816 FunFam Glutamine--tRNA ligase cytoplasmic 9 122 - -
Glsi05g0399 816 MobiDBLite consensus disorder prediction 189 224 - -
Glsi05g0399 816 Gene3D HUPs 257 603 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0399 Glsi-ChrGlsi05 52924573 52938311 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0399 05 52924573 52938311 Glsi05g0399 05 52924573 52938311 ECH