Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0330 ATGGCCGCGACGCCGTCTTCTGCGGCCAGCACCAACATCATGCTTGCTATCTTCGAGAAGAAGACGAACCCAATCGATCTCTATCGCCCTCTTCGCAATTACATCGCCTTCCACTACTCCGAACGCGAGGCTCAGAACCTCGAAGACGACCTCGAAACCCTTAAGCAACTCCGTTCCGACATCGAGCGCCACTCTGACCCTTCCCTGACTTCTCGCCGTGACCTCCTTCAATCCTACTACAAAGCTCTCTGCCTGGTTGAGACCCGTTTCCCTATCTCCCCAGACCAAGATCACGTTAACACTATTAGCTTTGTGTGGTTCGATGCGTTTAAGCCCAAACAGAAAGCGACCCAGCAGAATATTCACCTAGAGAAAGCAGCGGTGTTGTTTAATTTGGGTGCTATTTATAGTCAGATTGGGCTGTCCTATGATAGGAATACTGTTGATGGCCGGAGGCAGGCCTCACATGCTTTTATTGCAGCTGCTGGGTCCTTTGCTTATTTGAGGGATAATGCGGCGATGAAAGCGTCAATTGGGAGTTCCACAACAGTGGATGTGTCGGTGGAGTGCGCAGGAATGTTGGAGAGGTTGATGCTGGCTCAGGCACAAGAGTGTGTGTTTGAGAATACCATTGCCAAAGGGAGCACCCCGGGGGTTTGTGCCAAGATCTCTAGGCAGGTTGGGCTTTACTATGAGGAAGCTTTAGCTGCATTGAATGTTGCACCTTTAAACCAGCATTTTGATAAGCCATGGATAGCTCATGTGCAGTTAAAGGCATCTCTATTCTTTGCAGAAGCTTGCTATAGGTATGGGATAGAGCTACATGAGAAAGAAGAGATAGCAGAGGAGATTGCACGACTGAAGAGTGGGGTTAATGCTTTAACTGAGGCAAAGAAAAGCTCAAAAGGTGCTGCAGCACAAATCCTAGATGCAAGTAGTAAATTAGAGGCCAATCTTAACCGAAACCTAGAAAGGGCTGTCAAGGAGAACGATAGAGTTTACCTCATGAGGGTTCCTTCCCTCAATTCCTTACCACCTCTTCCAGCATTTTCCTTGGTGAAGCCAATGGCAATGAATGAGGTGTTAGATGCAAGTAAAGAGAAGATGTTTGCAACTCTTGTTCCTGACAGCAGTGCAAAGGCTCTCTCTAGGTATACTGAAATGGTAGATGAAATAATAAGAACGCAGGCTGAAAAGTTACAACAGGCTAGTGAGTTAACCCGAGTTAGGCTTAAGGAAATGGAGCTGCCTGAATCTATTCTTGCTTTGGAAGGAAATTTTAGTCTACCAACACATCTCAAAGAAGATGTGGAAGCTGTGCAGATCAGTGGGGGCCCTGCTGGTTTGGAAACAGAGTTACAGCAACTTAAGGACCTTAGGAGGGTGAATCAAGAACTGTTGGTCCAGACTGAGGAGCAGTTGCAGAAGGAAGCAAGAGAAGATGCTCAGTTTAGAAGCCAATTTGGGACAAAGTGGACTAGGCCTCAATCAAGTACTTTGACAAAGAACTTGCAGGATAGGTTAAATAGGTTTGCAGGTAACTTGAAGCAAGCTGCCGAAAGTGATGGTCGGATTGAGCATTCTGTTAGAGAACATTCAGCCCTCATGTCAATCCTTGACAGCCGTCCGATTGAATCTGCACTCCCTTCCTTGGCAAGGCCAATAATGTCTTTGGATGCAAATGAAGATGCTATTGTGGGGTCCCTAAAGCAGAGCTTGAGGCAGCTGGAAATTCTGGGAGCTCAAAGGGCTGGTCTGGAAGACATGCTTAAAGACATGAAAAGAAAGGATGATATACTACCCAAGTTGATGACATCAACTGGCTCTTATGAGGATCTTTTCAAGAAAGAGATAGCAAAATATGACCATATTTGTGAAGAAATAGCTCAAAATATCGAGGCACAAGAGCAGCTGTTGCTGCAGATCCAGGCTCAAAATGACGAGTTCTCTACTGTCTTTAATCTTGAAGATTACAAAGCTTCGCGTGAAAAATGCTACAAGCAGATTGAAGCTGCTATAACAAAGTATCAAGAAATAAAAGACAACGTCAATGAAGGGTTGAAATTTTATGTTACACTGCAGGATGCAATCACAAATGTAAAGCAGCAGTGCAGTGACTTTGTAATGACCAGAAACATCCAGTGCAGGGAAATGATTGAAGATGTCCAGAGACAAGTAGCTGGTCTCAGTTTCCAGGATAGCAAAACCACAGGTCCTTTAAACAGCAGCTACCCTTCAATGGGACACCAAACCCCAAGATCCAATCCACCACAAACAGATTCTTGCCCCCAAACTCCATATTATCAGCCACCTGAGCAGCCACCAGTGGCTGGGTATGTTCAACCCCCTACATATGGTTCCACACATCAACCTCCTCCTTCGTATGGTTCCACGCATCAACCCCCTCCTCCTTATGGCTCTGCACATCAACCCCCTCCTCCTTATGGCTCTGCACATCAACCCCCTCCTCCATACCACATTCCACACACATCAGCTCCTCAATACCCTCCTTCTCAGGTCCACCAGCAGCCACCACCAAGCTATGACTATGGCCAACCTGCATATTCTGGATGGCGTGGTCCTTATTATAATGCACATGCACAACAACCTACATCGGTTCCTCGGCCTCCTTATAGTATTCCAGGTCCATATCCTCCTCAACAAAGTGGCTACTATAAGCAGCAGTAG 2688 0.4635 MAATPSSAASTNIMLAIFEKKTNPIDLYRPLRNYIAFHYSEREAQNLEDDLETLKQLRSDIERHSDPSLTSRRDLLQSYYKALCLVETRFPISPDQDHVNTISFVWFDAFKPKQKATQQNIHLEKAAVLFNLGAIYSQIGLSYDRNTVDGRRQASHAFIAAAGSFAYLRDNAAMKASIGSSTTVDVSVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLNQHFDKPWIAHVQLKASLFFAEACYRYGIELHEKEEIAEEIARLKSGVNALTEAKKSSKGAAAQILDASSKLEANLNRNLERAVKENDRVYLMRVPSLNSLPPLPAFSLVKPMAMNEVLDASKEKMFATLVPDSSAKALSRYTEMVDEIIRTQAEKLQQASELTRVRLKEMELPESILALEGNFSLPTHLKEDVEAVQISGGPAGLETELQQLKDLRRVNQELLVQTEEQLQKEAREDAQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIEHSVREHSALMSILDSRPIESALPSLARPIMSLDANEDAIVGSLKQSLRQLEILGAQRAGLEDMLKDMKRKDDILPKLMTSTGSYEDLFKKEIAKYDHICEEIAQNIEAQEQLLLQIQAQNDEFSTVFNLEDYKASREKCYKQIEAAITKYQEIKDNVNEGLKFYVTLQDAITNVKQQCSDFVMTRNIQCREMIEDVQRQVAGLSFQDSKTTGPLNSSYPSMGHQTPRSNPPQTDSCPQTPYYQPPEQPPVAGYVQPPTYGSTHQPPPSYGSTHQPPPPYGSAHQPPPPYGSAHQPPPPYHIPHTSAPQYPPSQVHQQPPPSYDYGQPAYSGWRGPYYNAHAQQPTSVPRPPYSIPGPYPPQQSGYYKQQ 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0330 895 MobiDBLite consensus disorder prediction 763 778 - -
Glsi05g0330 895 Coils Coil 449 473 - -
Glsi05g0330 895 ProSiteProfiles BRO1 domain profile. 12 407 IPR004328 -
Glsi05g0330 895 Coils Coil 576 596 - -
Glsi05g0330 895 PANTHER PCD6 INTERACTING PROTEIN-RELATED 13 889 - -
Glsi05g0330 895 Coils Coil 625 645 - -
Glsi05g0330 895 Pfam BRO1-like domain 14 393 IPR004328 -
Glsi05g0330 895 PRINTS Proline rich extensin signature 745 757 - -
Glsi05g0330 895 PRINTS Proline rich extensin signature 820 837 - -
Glsi05g0330 895 PRINTS Proline rich extensin signature 771 792 - -
Glsi05g0330 895 PRINTS Proline rich extensin signature 865 890 - -
Glsi05g0330 895 PRINTS Proline rich extensin signature 797 813 - -
Glsi05g0330 895 SMART BRO1_2 13 397 IPR004328 -
Glsi05g0330 895 CDD V_Alix_like_1 375 711 - -
Glsi05g0330 895 MobiDBLite consensus disorder prediction 795 831 - -
Glsi05g0330 895 CDD BRO1_Alix_like_1 14 369 - -
Glsi05g0330 895 Coils Coil 277 297 - -
Glsi05g0330 895 Gene3D alix/aip1 like domains 421 702 - -
Glsi05g0330 895 Coils Coil 309 329 - -
Glsi05g0330 895 Gene3D alix/aip1 like domains 8 374 IPR038499 -
Glsi05g0330 895 Coils Coil 37 64 - -
Glsi05g0330 895 Gene3D alix/aip1 in complex with the ypdl late domain 375 653 - -
Glsi05g0330 895 MobiDBLite consensus disorder prediction 730 895 - -
Glsi05g0330 895 MobiDBLite consensus disorder prediction 730 762 - -
Glsi05g0330 895 Pfam ALIX V-shaped domain binding to HIV 428 713 IPR025304 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0330 Glsi-ChrGlsi05 51090609 51099383 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0330 05 51090609 51099383 Glsi05g0330 05 51090609 51099383 ECH