Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1976 ATGGCATTTCACGTAGCTTGCCCAATTACATGCCGCCGAATCTGCTTCTGCACGCTAGGGTTTCCGCGCAGCCTTCACCCATCGAAGGCCAAGCATGAATTCTTGGACGAGGTCGCCAGGGTTGAGGAGTTTCTCAAGGACCCATTGGGAATTAGGGCTCCGGACAGGGAACACACCGTGCAAGTCGTGGTACCCAAGGTTGTGCCGCCGCCGCCGCCGCCGCGGCAATTGCAGTCCACGCCGGCTGATGGGGTTCCCGTTGCTGATGCGGTGGATGAGGCTGTGTCGACTAAGGCCAAGCGGGTCGCGCTGCAGCGGAAGGGGGCTGCCGCAATGATTGCTGCTGAGGAGTACGCACGTCAACTTGAGTCCGGGGATGTGGCGGATGCATCAGGAAATCTTGCTGGAGAAGAACAGGGTCAACTGAATGTCAAAGTCTTTTGCCGCATGTGCAATCGTGTTGAAAATGAAGGAAGTGATAGAGCCAAAAAAATGCTCTCATGCAAAAGTTGTGGTAAGAAGTACCATAGGAACTGCTTGAGAAGTTGGGCTCAAAATAGAGATTTATTTCATTGGAGTTCGTGGACTTGTCGTGCTTGTCGGATTTGTGAGGCTTGCAGAAGGACAGGAGATCCCAGTAAGTTCATGTTCTGCAGAAGGTGTGACGGTGCTTACCATTGTTATTGTTTGCAGCCTCCTCACAAGAATGTTAGTACCGGGCCCTATTTGTGCCCAAAACACACAAGGTGTCACAGCTGTGGATCCAATGTTCCTGGAAATGGGCTAAGTGTGAGGTGGTTTCTGGGATACACCTGCTGTGATGCATGCGGAAGATTGTTTGTGAAAGGGAACTACTGCCCTGTTTGTTTGAAGGTCTATAGAGATTCAGAATCAACTCCAATGGTTTGTTGTGATATTTGCCAGCGTTGGGTGCATTGCCAGTGTGATAATATAAGTGATGAAAAATATCTTCAATTTCAAGTGGATGGGAATCTGCAGTATAAATGTCCCACATGTCGTGGGGAATGTTATCAGGTCAAGGATTTGGAGGATGCTGTTCAAGAGCTTTGGAGGAGAAGAGATATTGCTGACAGAGATTTAATTGCCAGCTTGAGGGCTGCTGCTGGCTTACCAACACAAGACGAAATATTTTCCATTTCACCATATTCAGACGATGAGGATAGTGAGCCTGTAAAAGCAAAGAGTGAATCAGTGCGTTCCTTTAAGTTCTCTCTGAAGAATTTATCCGATCACTCACCGAAGAAGACGAAAGATTATGCAAAGAAAAGTTCAAGCAAAAAGCATGCTAAGAAAAAGGATTATCAGCCTTTTATGACTGGTAAAAGTGATCCACATCATAGTTTCGAAGGACATAGTGATGTCAAATCCTTGCATAGCTTGGATGATGATATCCAATCCCACAGAAATGAAGGTCCTGATGCTTATTCTTCACCTGCTGCTGGAAGCCTGAGTCAAACTGAAGGATCTTATCATGTTAATCAGCCAGGGATCTTGAAACAGAAGTTTGTGGATGAGGTCATGGTCAGTGATGAGGAGAGGAAACCCAGAGTTGTTCGAATTAAGAGCAATAAGGCACATACTCTTGATAGTGAAGAGGAGACTGGCAAAAATGGTGATAAAACTCAGAATGTGAAAGGGAAGAAATTGGTTATAAATTTGGGGCCACGAAAAATTAACATAACTAATTCTCCCCGATCTGATACTTCAAGCTGCCAAAGAGATCAAGATCTCGGTAGCACTAATGGCAATGAAGATATAAGCCAATCAAGGAAGGGAGACAAGTTTATGTTAGATAGGCATGATGGCACAGCTAGAAATGTTGATGGTAAAGGTAACAGAGTTGATGCTCGTCAATCAAAAGATTTAAAGGTTGCAGGAAGAGAAGGACATTTGATAAAGCTGGGAAAAGTTAAGCCCGAAAGTTCTGAATTGAACCCAACCTCTGGTAGAGGCAGTATTGCTGATGGATATGAATCTGTTCATAAAGAGCGACCCCGTATCTTGCTGGGAAAACGTAGTACTGAGGGAGTGATTGATCAAGATGGAACTGTACGAGCTATGCCCAGGGGTGAGAGGACGTTTTTAGGGAAGCAATCAGAAGGCAGGTCTGATGCATATGATGAGACAGATGAAAATACTAATCACACACCTTCAAATTCTTTGCCAAAAGACTCTAAACCTTTATTGAGATTTAAATTTAAGAAACCTACCATTGAAAGTCAAAATTCGCCTCATCGGGAGGATGAGAAGACTACAATCAAGGGACAGAGGTCAAAAAGGAAGAGACCTTCACCTTTTATGGAGAAAGCATCAATTAATGAAGATGAAGATGTAGCACAATCGCATCAAGACGGTCCAATGGATGAGATTATGGATGCTAATTGGATATTGATGAAATTGGGTAAAGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCTGACAATTCTTGGCACAAGGGAGTGGTCACTGACGTAATTGAAGGCACTTCAAAAATATCTGTTACCTTAGATGAGGGGAAGGTGAAGATCTCGGATCTCCGTAAGCAAGGGGTCCGTTTTGTTCCACAAAAGCAGAAGAGATCAAAAGTTTGA 2619 0.4437 MAFHVACPITCRRICFCTLGFPRSLHPSKAKHEFLDEVARVEEFLKDPLGIRAPDREHTVQVVVPKVVPPPPPPRQLQSTPADGVPVADAVDEAVSTKAKRVALQRKGAAAMIAAEEYARQLESGDVADASGNLAGEEQGQLNVKVFCRMCNRVENEGSDRAKKMLSCKSCGKKYHRNCLRSWAQNRDLFHWSSWTCRACRICEACRRTGDPSKFMFCRRCDGAYHCYCLQPPHKNVSTGPYLCPKHTRCHSCGSNVPGNGLSVRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSESTPMVCCDICQRWVHCQCDNISDEKYLQFQVDGNLQYKCPTCRGECYQVKDLEDAVQELWRRRDIADRDLIASLRAAAGLPTQDEIFSISPYSDDEDSEPVKAKSESVRSFKFSLKNLSDHSPKKTKDYAKKSSSKKHAKKKDYQPFMTGKSDPHHSFEGHSDVKSLHSLDDDIQSHRNEGPDAYSSPAAGSLSQTEGSYHVNQPGILKQKFVDEVMVSDEERKPRVVRIKSNKAHTLDSEEETGKNGDKTQNVKGKKLVINLGPRKINITNSPRSDTSSCQRDQDLGSTNGNEDISQSRKGDKFMLDRHDGTARNVDGKGNRVDARQSKDLKVAGREGHLIKLGKVKPESSELNPTSGRGSIADGYESVHKERPRILLGKRSTEGVIDQDGTVRAMPRGERTFLGKQSEGRSDAYDETDENTNHTPSNSLPKDSKPLLRFKFKKPTIESQNSPHREDEKTTIKGQRSKRKRPSPFMEKASINEDEDVAQSHQDGPMDEIMDANWILMKLGKDAIGKRVEVHQTSDNSWHKGVVTDVIEGTSKISVTLDEGKVKISDLRKQGVRFVPQKQKRSKV 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1976 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 342 IPR013083 -
Glsi04g1976 872 SUPERFAMILY FYVE/PHD zinc finger 283 341 IPR011011 -
Glsi04g1976 872 MobiDBLite consensus disorder prediction 734 790 - -
Glsi04g1976 872 MobiDBLite consensus disorder prediction 527 550 - -
Glsi04g1976 872 MobiDBLite consensus disorder prediction 437 476 - -
Glsi04g1976 872 PANTHER HL01030P-RELATED 96 521 - -
Glsi04g1976 872 MobiDBLite consensus disorder prediction 485 500 - -
Glsi04g1976 872 SUPERFAMILY FYVE/PHD zinc finger 192 253 IPR011011 -
Glsi04g1976 872 SMART PHD_3 202 248 IPR001965 -
Glsi04g1976 872 SMART PHD_3 285 340 IPR001965 -
Glsi04g1976 872 SMART PHD_3 147 201 IPR001965 -
Glsi04g1976 872 MobiDBLite consensus disorder prediction 702 718 - -
Glsi04g1976 872 FunFam PHD finger family protein 142 257 - -
Glsi04g1976 872 FunFam PHD finger family protein 280 342 - -
Glsi04g1976 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 257 IPR013083 -
Glsi04g1976 872 ProSitePatterns Zinc finger PHD-type signature. 148 200 IPR019786 -
Glsi04g1976 872 SUPERFAMILY FYVE/PHD zinc finger 141 201 IPR011011 -
Glsi04g1976 872 ProSiteProfiles Zinc finger PHD-type profile. 283 342 IPR019787 -
Glsi04g1976 872 MobiDBLite consensus disorder prediction 563 593 - -
Glsi04g1976 872 MobiDBLite consensus disorder prediction 415 503 - -
Glsi04g1976 872 CDD PHD_SF 147 200 - -
Glsi04g1976 872 ProSiteProfiles Zinc finger PHD-type profile. 145 203 IPR019787 -
Glsi04g1976 872 MobiDBLite consensus disorder prediction 527 621 - -
Glsi04g1976 872 MobiDBLite consensus disorder prediction 594 621 - -
Glsi04g1976 872 MobiDBLite consensus disorder prediction 689 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1976 Glsi-ChrGlsi04 69691437 69701062 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1976 04 69691437 69701062 Glsi04g1976 04 69691437 69701062 ECH