Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1931 ATGGATGGGTATGAAGCTACAAGAATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAATGCTTCAAAAATCATGGGTCTGCTTCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGATTAGCATTTGGTCCAGAAGCTCTAGTTCACTCAGTGATTGTTAAAGCTCGAAAAGACTTGGGATTGTCCTCGTACTCTCCTTCTACACCCTCCACTCCTTCATCTCCTTCTCCTTTCCTTTCCAGCAACCCAGTCCTTATTTCCAGGCCAAATTCTACTCCTTCCAGGCTCCTTAACACTAGTGGGATTAACCTTCCTCCTTCTCTTACTATCCCAAACCCTTCCTCTGCTACTTCAGCTTCTTGGACTACTCTGTCTGAGCTTCAAAACCCAGAAGATTTGATGAGCCACAGCAATTTGGTGGTTGGGTCTTCTACTTCTATGAACACTTCATCTTCGTTGCCCTTATATGGAAACGGAGGGTCCGTTTCCGATCCAATCGACGAGTTTCAACTTCAGGACCAGCTTTCCTTCCTCAATGATGGGTCTTCGACCCTTGGACCCAAAAACCCAGATTTGTTTTACCCTCAATCTGACTTGTCTTCAAGCCCTACCGGTGGTAATGGCGATCCCACCCTCTTTCCATCGTATGGTTGGGGAGGGTCTGTTCACCGCCGGAGTTGCTCCGTCAACGATGCTTGTTTAGGGTCTGAGGACCCAAACTCTGGTCTAGGGTGGAAGCCTTGCCTTTATTTCGCTAGAGGGTATTGCAAAAATGGCACTAGCTGCAGGTTCCTTCACGGAGGCCTTGGAGATTCTGATGGTGCCGCAATGGTTGGGTCTCCTAGCAAGATTGAGATGATGGACCAGAGCCATGAGATTCTCAGATCTAAAACTGCTCAACAGCAAAGATTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCTTTCTCCTACTCCCCCAAGTGCATGAACTTTCTACTTCAGCAGCAACAAAATGATACCCAGAGAGCAGCAGCTGCTCTCATAATGAACGAGGATTTGCACAAATTTGGGCGATCGCGGCTAGAAAGAAACGATTTTTCGCTCAATGGAGGTTCTGGAATAGGCAACCCAGCTTCGAGGCAGATCTACTTGACCTTCCCAGCTGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGACCTGTTCAAGACGTGAGGATCCCATACCAGCAGAAGCGTATGTTTGGGTTTGTTACCTTTGTCTACCCAGAGACTGTGAAGCTCATTCTGTCTAAGGGAAACCCTCATTTCGTTTGTGATGCTCGAGTTCTAGTCAAGCCTTACAAGGAAAAAGGCAAAGTACCAGACAAGAAGCAGCAGCAAGTGGAAAGGGGTGATTTCTCACCATGTGGTACTCCTACTGGACTAGATGCCAGAGACCCATATGATCTCCAACTTGGTGGGAGAATGTACTACAATGCTCAAGACATGCTGTGGAGGAGAAAATTGGAGGAGCAATCTGATTTGCAGCAAGCTCTAGAGCTCCAAAGTAGAAGGTTAATGGGTCTGCAACTTCTTGACATTAAGAAGCATCACCACCGAGCACTTTCAACAGGGAGTCCAATTCCTTCCCCTACACACTCTCCAAATATGTTCAATCAGAACCTTGCTCTTCCTTCGTTTCGTGGCAGCTCAGAGTCCCCAGAGGAGAGTGTTTTAAGCTCTGCTCCTGCTAGCGCTGCACCAGTTCCCGTTGTTCAGCCATCATCGCAGCCAAAGGTTAACATTTCTGCTAGCAAAGGGACAGTAAATGGAGAAAATGGAAGCAGCAATGGCAATGGCTCTGGCAATGGCAAGCAGAGCTCTAGTCATGATGACTGTAATTTGCAAGAATGTTTGGAGCATAATCTCCCTGACAACCCTTTTGCTTCTCCCACAAAAGCTGCCTGTGGAGACTACATGGCTGCCTTCTCCAAGGGACCCAAAGAGGCCATCGATTCAGATGCCTCAGCTGCATCTGCTAACTCGGAGTTTGGTACCAATGCGTTTCTTCCAGCAGCATCTGCACTAGACATGGGGTCTTTCAAGTCCTTCAACTGCCAAATGCCAAGGTTCTCTTCTGGTCATGGAACCATTGAAATGTTCGCTGGCACTGGTGGACCCATCGGCATTTAG 2175 0.4726 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVIVKARKDLGLSSYSPSTPSTPSSPSPFLSSNPVLISRPNSTPSRLLNTSGINLPPSLTIPNPSSATSASWTTLSELQNPEDLMSHSNLVVGSSTSMNTSSSLPLYGNGGSVSDPIDEFQLQDQLSFLNDGSSTLGPKNPDLFYPQSDLSSSPTGGNGDPTLFPSYGWGGSVHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDSDGAAMVGSPSKIEMMDQSHEILRSKTAQQQRLAAASQLMASSFSYSPKCMNFLLQQQQNDTQRAAAALIMNEDLHKFGRSRLERNDFSLNGGSGIGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQVERGDFSPCGTPTGLDARDPYDLQLGGRMYYNAQDMLWRRKLEEQSDLQQALELQSRRLMGLQLLDIKKHHHRALSTGSPIPSPTHSPNMFNQNLALPSFRGSSESPEESVLSSAPASAAPVPVVQPSSQPKVNISASKGTVNGENGSSNGNGSGNGKQSSSHDDCNLQECLEHNLPDNPFASPTKAACGDYMAAFSKGPKEAIDSDASAASANSEFGTNAFLPAASALDMGSFKSFNCQMPRFSSGHGTIEMFAGTGGPIGI 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1931 724 MobiDBLite consensus disorder prediction 452 479 - -
Glsi04g1931 724 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 249 269 IPR000571 GO:0046872
Glsi04g1931 724 MobiDBLite consensus disorder prediction 534 626 - -
Glsi04g1931 724 Gene3D - 374 469 IPR012677 -
Glsi04g1931 724 MobiDBLite consensus disorder prediction 189 210 - -
Glsi04g1931 724 SMART c3hfinal6 246 270 IPR000571 GO:0046872
Glsi04g1931 724 MobiDBLite consensus disorder prediction 584 626 - -
Glsi04g1931 724 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 382 453 - -
Glsi04g1931 724 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 648 - -
Glsi04g1931 724 SUPERFAMILY RNA-binding domain, RBD 387 462 IPR035979 GO:0003676
Glsi04g1931 724 Gene3D - 238 336 - -
Glsi04g1931 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 387 432 IPR000504 GO:0003723
Glsi04g1931 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 375 451 IPR000504 GO:0003723
Glsi04g1931 724 ProSiteProfiles Zinc finger C3H1-type profile. 244 271 IPR000571 GO:0046872
Glsi04g1931 724 SUPERFAMILY CCCH zinc finger 247 269 IPR036855 GO:0046872
Glsi04g1931 724 CDD RRM_AtC3H46_like 377 446 IPR034365 -
Glsi04g1931 724 MobiDBLite consensus disorder prediction 539 574 - -
Glsi04g1931 724 MobiDBLite consensus disorder prediction 65 124 - -
Glsi04g1931 724 SMART rrm1_1 376 446 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1931 Glsi-ChrGlsi04 68974808 68977768 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1931 04 68974808 68977768 Glsi04g1931 04 68974808 68977768 ECH