Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1273 ATGAGGGAGGAAGAGATTGAGAAGCTTCGTGGAGTGGTGAGGGACTGCGTGAGCAAGCACCTCTATTCGTCTGCTATCTTCTTCGCCGACAAAGTTGCTGCCTTTACCAGTGATCCCGCCGACATCTACATGCAGGCTCAGGCCCTCTTCCTCGGTCGCCATTACCGTCGCGCTTTTCACCTCCTCAACGCCTCCAAGATTGTTCTCCGTGATCTCCGATTCCGCTACCTCGCTGCCAAGTGTCTTGAGGAGCTCAAGGAATGGGATCAATGCTTATCAATGCTGGGTGAGGCAAAAGTGGATGACCATGGAAATGTTTCTGACACAAAGGATTCCAACGTTATGTACTTGGATAAAGATTGTGAAGATCGTGAGATCAATATATCTTCTGCAATATGCTTCTTAAGAGGCAAAGCATATGAAGCTCTAGAAAACCGTGCCCAGGCTCGATTGTGGTACAAAGCTGCTATAAAAGCTGATCCTTTATGCTATGAGGCTCTGGAATGCCTTATTGAAAATCACATGCTTACTTGTGAGGAAGAAGCAAATTTGATTTCATCATTGCAATTCAGTAGCGAAGATGGATGGCTCTCATCATTTTATTCATGTTTAATAAAGAAGTATGAGAAAGATAATGTTGTGGAATCCAAGTTCCGAGACCTTGAGAATAGAAGCTGTAAAATTGACCAGTCTAACCCCTCTTTCTTGGTCGCACTGAAAACCAACACTGATCTATTGGCCTGCAAAGCTGAATACTACCATCAGTGCGGTGAATATCAGAAATGTTTTGAATTAACATCTGTTCTGCTTGAGAAGGATCCTTTCCATCTCAAGAGTACCTTGGTACATCTGGCAGCTGCTATGGAGCTTGGACATTCAAATGAGCTCTATCTGATGGCATGCAATTTGGTGAAGGACTATCCTCAAAAGGCTTTATCTTGGTTTGCTGTTGGTTGCTATTACTATTGTATCAAGAAGTATGACCAATCCCGTCGTTATTTCAGCAAGGCAACTAGTCTAGATGGAACATTTCCACCTGCATGGATAGGCTATGGGAATGCTTATGCTGCTCAAGAAGAGGGTGATCAGGCTATGTCAGCTTACCGCACTGCAGCTCGTCTGTTTCCTGGGTGTCATTTGCCCACTCTTTACATTGGAATGGAATGCATGCGAACCCACAGCTATAAGCTTGCTGAGCAGTTTTTTATGCAGGCTAAGGCAATTTGCCCCTCAGATCCACTTGTGTTTAATGAACTTGGAGTTGTTGCCTACCATATGCAAGAGTATAACAAAGCAGTGTGGTGGTTTGAGAAAACATTATCCCTCATCACATCCTCTTTAAGTGAAATGTGGGAACCGACTGTAGTTAATCTTGCTCATGCCTACAGAAAGTTGAAGATGTACGATGAAGCAATTTTATATTATGAGAAAGCACTTGCATTGTCAACTAGAAGTGTGAGCACTTATGCCGGTCTGGCATACACTTTCCACTTGCAGGATGACTTCACTACAGCAATTACTTGCTATCACAAAGCCTTGTGGCTGAAACCTGATGACCAGTTCTGCACTGAAATGTTGAGCTGGGCTCTAATAGACGAAAGCCGATGTGGCATTGACCCCTCAGTTGAATTCCGGTGA 1638 0.4402 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTSDPADIYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWDQCLSMLGEAKVDDHGNVSDTKDSNVMYLDKDCEDREINISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCEEEANLISSLQFSSEDGWLSSFYSCLIKKYEKDNVVESKFRDLENRSCKIDQSNPSFLVALKTNTDLLACKAEYYHQCGEYQKCFELTSVLLEKDPFHLKSTLVHLAAAMELGHSNELYLMACNLVKDYPQKALSWFAVGCYYYCIKKYDQSRRYFSKATSLDGTFPPAWIGYGNAYAAQEEGDQAMSAYRTAARLFPGCHLPTLYIGMECMRTHSYKLAEQFFMQAKAICPSDPLVFNELGVVAYHMQEYNKAVWWFEKTLSLITSSLSEMWEPTVVNLAHAYRKLKMYDEAILYYEKALALSTRSVSTYAGLAYTFHLQDDFTTAITCYHKALWLKPDDQFCTEMLSWALIDESRCGIDPSVEFR 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1273 545 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Glsi04g1273 545 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
Glsi04g1273 545 SMART tpr_5 452 485 IPR019734 GO:0005515
Glsi04g1273 545 SMART tpr_5 345 378 IPR019734 GO:0005515
Glsi04g1273 545 SMART tpr_5 130 163 IPR019734 GO:0005515
Glsi04g1273 545 SMART tpr_5 486 519 IPR019734 GO:0005515
Glsi04g1273 545 SMART tpr_5 379 412 IPR019734 GO:0005515
Glsi04g1273 545 SMART tpr_5 243 276 IPR019734 GO:0005515
Glsi04g1273 545 SMART tpr_5 311 344 IPR019734 GO:0005515
Glsi04g1273 545 SMART tpr_5 413 446 IPR019734 GO:0005515
Glsi04g1273 545 SUPERFAMILY HCP-like 313 520 - -
Glsi04g1273 545 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Glsi04g1273 545 Gene3D Tetratricopeptide repeat domain 5 532 IPR011990 GO:0005515
Glsi04g1273 545 Pfam Tetratricopeptide repeat 488 519 IPR019734 GO:0005515
Glsi04g1273 545 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
Glsi04g1273 545 ProSiteProfiles TPR repeat profile. 311 344 IPR019734 GO:0005515
Glsi04g1273 545 SUPERFAMILY TPR-like 39 173 IPR011990 GO:0005515
Glsi04g1273 545 Pfam Tetratricopeptide repeat 457 481 IPR001440 GO:0005515
Glsi04g1273 545 PANTHER CELL DIVISION CYCLE 16,23,27 22 523 - -
Glsi04g1273 545 Pfam Tetratricopeptide repeat 132 161 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1273 290 518 Glycosyltransferase AT3G04240 23.144 1.45e-10 62.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1273 04 13181314 13191685 Glsi04g1273 04 13181314 13191685 ECH