Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0731 ATGACAATCTCCTCTCAACCAGCAAACAAGGGTACTGAAAAGAGAAAAGAGGAAAGAGGTGACGGTAAGGTTTCTTGGGAGGGAGGGGAGATGGTTTTTGATGCTTTGCTGGAAAGGTTTAAGGAGCGGGCCTCTTCCAAACGAAACCTCTGCTTCGCCCTGAAACTAAATAATTTGCCTCATGTTTTTCCCCTTGTGGTAGAGATTGTGTGTTTGGTATCCGAACCTCTTCTTGAAGATCCTGAACAACATTCCAAGCTCAATAATTCCAAGATTCTCATTCTTGGGATTCTGTTTCTTTACCAGATCGATCTGATGGCTGACCAAGAGCAAAACGATGCAGCGGTTCCAGACACGTCCATTCGGATGCTTGAGGATAGTTCGTTTGACGGGATGGGCCCCAATCCTGTTGAGTCTACTGATGTGGTGAAGGTGGAGAGAGTCGAGTGTGAAAGTTTGGGGACTACTAGTTGTACTGTTGAGCAAGAGATGAGAAACAGTTCCGAGCCGATTGCTATGGAGTCTTCTTGTGTAGTGAAGGTGGACGGAGCAGTGTGCGAGAATTTGGGGATTTCGGGTAGTGCCATTGAAGAAGGGATGGGAAATATTAGTTTAGTTCGCGGTTTTGAAAGTTCTGTTATAATTGAGGGGAATGGTGGGAAGGATGAGATAATGACGAATGAGGATGAGAGTGAAAGTTCAGAGTCTGAGAGTACTAATCCATCTTCTTCAACTTCTTGCAGCGGTAGTAGTAGCAGTGATAGTGAAAGTAGTTCTACTAGTGGTAGTTCTAGTGATGATGATGATGATATTGAAGATAATAAGGAAGAGAGAAAGACGGAAAAAGGGGAAGGACAGAGAATAAACATTCAAGTGGAAGCTGAAGAAGGTGAGATAAGAGATTCTGATGAACAAGAGCTGGTTACAGAAACTGCCGCTAGTGATGATGATGATGAAGATTATGATGCCAATACTAATGCTAAGGGAAGACCCATCAGGTCAAAGAATGAGCTGAAGGATCTTACTCCAGTTCCTCCAGTGAACGTGACCTTAGAACCATACCATCAAATGCTGCCAGTAGGAGTTGTTATGTCGATAATCAATGCCCAAGTCATTGTGGAAGGGGTGGAGAAGCATGATCCTCTTAATGAAGGATCTATTCTCTGGATAACTGAAAGCCGAACACCACTAGGGTTAGTTGATGAAATCTTTGGACCTGTCAAAAACCCTTATTATGCTGTAAGATACAATTCTGAAAATGAAGTCCCTAAGGGGATCCATGGCGGCACTTTGATCTCTTTTGTACCAGAATTTGCCAATCTTGTGCTTAATAACAAGGATCTATACAAGAAAGGATATGATGCTTCTGGTTTGAATGATGAAGAGTTGTCTGATGAAATAGAGTTTTCGGATGATGAGAAAGAGCAGCAATACAAGAAAATGCAGAAAATGACAAAGAGAGGTTTTAATGATGAGAATCCTGGAAAGCAGAGAAACAATAGAAAGAAAGTTCCCATAAAAAGGGGTGCAGTACCTACTTATCCAGCTGCACCTGCTGCCCCATCGCTTGATCATGAAAATTTTACACCTTTTCCAGGCAACGGACAAGGTCTTCTTGGGGCAACTCCGATAGTTCCACCATTTCCACCTACAAGTGCAGGTCCTAATTTAGGTTCAAATGGAGTTTGGACAAATGGGATACCACTTCTGCAGCCACAGTCTGCTCTACTTCCTAATGGATTTCCTCCTAATGCCTTACCGTGGTTCCCAGGAAATACACAAAATTCTTTTCAGTTGCCTGTGACTGGAATTCCATTTCAACAGCAGTTTGATCCCAGTCTGGGATCACTTCCGCCAACCATGTTTCCTGGGGTACAGTCCAATATATTTGCACAACCTATGTACCCACCGGGTCTTGTGGGTCAAAGTCAAATGCCATATGGGTTGAGCTCACACATTCCGCAGATTCAGCCACCTATATGTGCTGGAGAACAACGTTTTTCATCCAATGAATTGCAGTCAGATAGAAGCGGTAATTCTCATTCAAGTAATATTCCAGACAATCGCCATTCTCCCCATCAATTTCATGCTGGTGCATCTGGTAGCCGTGGGAGGAAAACATTTCGTCATAGGGGTCGGAAAGGTTGGAGACCAGCCAAGTAA 2163 0.4346 MTISSQPANKGTEKRKEERGDGKVSWEGGEMVFDALLERFKERASSKRNLCFALKLNNLPHVFPLVVEIVCLVSEPLLEDPEQHSKLNNSKILILGILFLYQIDLMADQEQNDAAVPDTSIRMLEDSSFDGMGPNPVESTDVVKVERVECESLGTTSCTVEQEMRNSSEPIAMESSCVVKVDGAVCENLGISGSAIEEGMGNISLVRGFESSVIIEGNGGKDEIMTNEDESESSESESTNPSSSTSCSGSSSSDSESSSTSGSSSDDDDDIEDNKEERKTEKGEGQRINIQVEAEEGEIRDSDEQELVTETAASDDDDEDYDANTNAKGRPIRSKNELKDLTPVPPVNVTLEPYHQMLPVGVVMSIINAQVIVEGVEKHDPLNEGSILWITESRTPLGLVDEIFGPVKNPYYAVRYNSENEVPKGIHGGTLISFVPEFANLVLNNKDLYKKGYDASGLNDEELSDEIEFSDDEKEQQYKKMQKMTKRGFNDENPGKQRNNRKKVPIKRGAVPTYPAAPAAPSLDHENFTPFPGNGQGLLGATPIVPPFPPTSAGPNLGSNGVWTNGIPLLQPQSALLPNGFPPNALPWFPGNTQNSFQLPVTGIPFQQQFDPSLGSLPPTMFPGVQSNIFAQPMYPPGLVGQSQMPYGLSSHIPQIQPPICAGEQRFSSNELQSDRSGNSHSSNIPDNRHSPHQFHAGASGSRGRKTFRHRGRKGWRPAK 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0731 720 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 156 657 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Glsi04g0731 720 MobiDBLite consensus disorder prediction 297 322 - -
Glsi04g0731 720 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 329 435 - -
Glsi04g0731 720 MobiDBLite consensus disorder prediction 703 720 - -
Glsi04g0731 720 MobiDBLite consensus disorder prediction 668 720 - -
Glsi04g0731 720 MobiDBLite consensus disorder prediction 486 509 - -
Glsi04g0731 720 Pfam Gar1/Naf1 RNA binding region 358 439 IPR007504 GO:0001522|GO:0042254
Glsi04g0731 720 MobiDBLite consensus disorder prediction 236 262 - -
Glsi04g0731 720 MobiDBLite consensus disorder prediction 668 690 - -
Glsi04g0731 720 SUPERFAMILY Translation proteins 357 420 IPR009000 -
Glsi04g0731 720 Gene3D Probable tRNA pseudouridine synthase domain 330 435 IPR038664 -
Glsi04g0731 720 MobiDBLite consensus disorder prediction 275 296 - -
Glsi04g0731 720 MobiDBLite consensus disorder prediction 1 23 - -
Glsi04g0731 720 MobiDBLite consensus disorder prediction 217 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0731 Glsi-ChrGlsi04 5138237 5141616 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0731 04 5138237 5141616 Glsi04g0731 04 5138237 5141616 ECH