Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0616 ATGGAATATGGATATAAGATTCGAGTGGCATTCGCGATCGCTTCTCTTGCAGCTATCTCAATCTACTTCACTGCACAGCATAGGAGACGGCGTCGGCAAAAGTCTTCTCTGAGTTTATGTTACTTACACGCCGAACCAAAGCCTCAGTATGCGTTTAAGCGTGTCTTAGCGGATAACTCGTACACTACGTTCAAGCACTTGAAGCTCAATGACTCTAGCGATGAGAAAATTTCAAATTTGCATCCATTTGAGGCAGAGATTACAGCACTGTTAAAAAACCCTCAGCTTCAATTTGACTTTAGTACTGAGATTAAGGACTTGAAGATGAACGATGCATATCTTTGGGTTGAGACAGAGTTGCAATTAAAGGAACTGGTCAATGTATTGAGTAAAGAGAAATTCTTTGCTGTGGACACAGAACAACATAGCTTACGATCTTTTCTAGGCTTTACAGCATTAGTTCAGATTTCTACTCAACAGGAAGATTACTTGGTTGATACAATTGCCCTGCATGATTTAGTGGGCATTCTTCGCCCAGTTTTTGCCAATCCTTTAATTTGTAAAGTGTTTCATGGAGCTGACAATGATGTCGTTTGGCTGCAAAGAGATTTCCATATATACATTGTTAATCTGTTTGATACATCAAAGGCTTGTGAGGTGCTGTCAAAGCCGCAGAAATCACTTGCTTATTTACTTGAAACATATTGTGGTGTTGCAACAAATAAATTATTTCAGCGGGAAGACTGGAGGCAACGCCCCCTCTCAGCTGAAATGGTAAATTATGCACGAACAGATGCACACTATTTGTTGTACATTGCAAACTGTTTGATCAGTGAGCTCAAACAACTGGATGAAGAAAACTCTTGTTCCGATGACAAATTCCATTTTCTTCTCGAGGCTAGTCAGCGTTCAAACATGATTTGTTTGCAACTTTTCACAAAAGAGATTGAAGTTTCTCCTGGAGAATCTGCTGCATCATCATTATTTTCACGTCATTTGAGTGGTAAAAGTTCTCCTTCAGTTTCCACTGAAACCCAGTTTCAGAATTTTTTGAGGCGACTATGCGCATGGAGAGATCTAATGGCTCGTGTTCATGATGAGAGCTTGAAATATGTATTGTCAGACCAGGCAATTGTAGCTTTGGCAAATCAGCCTCCAACAAGTCAGTCTGAAATATACAATGCCATAGTTCAGGCTGATATCAACGTGGAAACGGGTGTCAATTCCTTATTTCCTTCTCCATCTCCTGTTGTTTGCAGTCACCTGAGTGATGTCTATGATTTGCTTGCAGACAATTTGGGTAATACTGGTGATATTTATTCAGTAATTCTTCAGAAGTGCTTGGGTCCAAATGGGAGTTGTCCACTTTCTATATTTAATTATTCTTTGTTGGTTAACAGTAACCTGAGACCTACTGTAGCCTATAAACACTACAGCGTAAAAAATTCAAAACAAGTTTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAATTCTCTTGTAAATCTCCTGTTTACCATAATTGTCGAATCTATGCTAATGATGGGCGGATGCTTTGTTATTGTGATCGGAGGAAGCTTGAATGGTACCTCAATCGAGATCTGGCAAAACTTATTGATGAAGATCCACCAGCTATAATGCTTCTTTTTGAACCCAAAGGTCGCCCAGAGGATGAAGACAATGATTTTTATATCCAGAGTAAGAAAAATATATGTGTTGGCTGTGGTGAAGGAAATCACTACTTGCGGTACCGGATAATCCCATCATGCTATAGAATGCATTTTCCTGAGCATTTGAAAAGCCACCGGTCTCATGATATTGTCCTGCTTTGTGTGGACTGTCATGAAGTTGCCCATGCTGCTGCAGAGAAACATAAGAGGAAAACAGCAGCTGAATTTGGAATTCCTCTCTATGTTCGTAAGGTAGTTGATCAGCAAGTGTCCAATGTAAGCTTTGAAGAGGGAGGTGTATCTCCATTACAACTACGAACAGCTGCCATGGCTCTTCTGCGCCATGGACCAAGAATGCCCCCCAATCGCCGAGATGAACTGACTGAGATTGTGAAGACATATTATGGAGGAAGGGAGATATCTGAGGAAGATTTAGAAAGAGCTCTGCTAGTTGGCATGAGTCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGTTTTTCTTTTAGACATTCTATGAGAAATACTTCTGCAGAGACAATACAGGAAAATCATGGCGATTGCACACTCAGAATGGGAGTGGTGGACACGTCAAATATTAATGTTCTTGATGGTTCATATGCAATCAAGGCAACAAGCAATGAAGAAAATAGAGAACTTTTCACGGTAAAAGGTGATGTGGGAAACCCCTCGTTAGCTTCTGATCTAGCAGTTGATGGAGCTGTCTCTACTATCTTAACTGGAAATGTGAGCGCAGGTATATCTGTATGTTCTAACGAGAACAGCACCTCTGATGTAAATCCTGATGATAGTTTTCAAAGTAGAAGGCCACCAAATGGAATTGGTGAATCGTCTTATTCCCCTAGAGATGAAGAATCCACTCAAGCTAAACAGAATTCAAAACTATCACTCTTAGGACATGGACCACATGGGAAACAAGTTGTAGAACATTTACTGCAGGAATATGGTGAGGATGGCATTCGTCAGTTTTGTCAAACATGGAGACAAGTATTTGTTAAAGCTGTAAACCCACGTTTTCTGCCTGCTGGCTGGGACATAAAACACAGTGGTAGAAGGGACTTCGGTGAATTCAGTGTATACAATCCTGTTAGAAAAGCATCTGCTACCACTGCTAGTGGCTAG 2814 0.4065 MEYGYKIRVAFAIASLAAISIYFTAQHRRRRRQKSSLSLCYLHAEPKPQYAFKRVLADNSYTTFKHLKLNDSSDEKISNLHPFEAEITALLKNPQLQFDFSTEIKDLKMNDAYLWVETELQLKELVNVLSKEKFFAVDTEQHSLRSFLGFTALVQISTQQEDYLVDTIALHDLVGILRPVFANPLICKVFHGADNDVVWLQRDFHIYIVNLFDTSKACEVLSKPQKSLAYLLETYCGVATNKLFQREDWRQRPLSAEMVNYARTDAHYLLYIANCLISELKQLDEENSCSDDKFHFLLEASQRSNMICLQLFTKEIEVSPGESAASSLFSRHLSGKSSPSVSTETQFQNFLRRLCAWRDLMARVHDESLKYVLSDQAIVALANQPPTSQSEIYNAIVQADINVETGVNSLFPSPSPVVCSHLSDVYDLLADNLGNTGDIYSVILQKCLGPNGSCPLSIFNYSLLVNSNLRPTVAYKHYSVKNSKQVSRKASRDLFVQKFSCKSPVYHNCRIYANDGRMLCYCDRRKLEWYLNRDLAKLIDEDPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKHKRKTAAEFGIPLYVRKVVDQQVSNVSFEEGGVSPLQLRTAAMALLRHGPRMPPNRRDELTEIVKTYYGGREISEEDLERALLVGMSPHERRRFEKKRGFSFRHSMRNTSAETIQENHGDCTLRMGVVDTSNINVLDGSYAIKATSNEENRELFTVKGDVGNPSLASDLAVDGAVSTILTGNVSAGISVCSNENSTSDVNPDDSFQSRRPPNGIGESSYSPRDEESTQAKQNSKLSLLGHGPHGKQVVEHLLQEYGEDGIRQFCQTWRQVFVKAVNPRFLPAGWDIKHSGRRDFGEFSVYNPVRKASATTASG 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0616 937 SUPERFAMILY Ribonuclease H-like 47 310 IPR012337 -
Glsi04g0616 937 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 35 926 IPR045092 GO:0000175|GO:0000467
Glsi04g0616 937 SMART 35exoneu6 113 281 IPR002562 GO:0003676|GO:0006139|GO:0008408
Glsi04g0616 937 MobiDBLite consensus disorder prediction 816 859 - -
Glsi04g0616 937 Pfam HRDC domain 349 392 IPR002121 GO:0003676
Glsi04g0616 937 SUPERFAMILY HRDC-like 346 402 IPR010997 GO:0000166|GO:0044237
Glsi04g0616 937 MobiDBLite consensus disorder prediction 816 864 - -
Glsi04g0616 937 Gene3D - 44 317 IPR036397 GO:0003676
Glsi04g0616 937 ProSiteProfiles HRDC domain profile. 344 424 IPR002121 GO:0003676
Glsi04g0616 937 Gene3D HRDC domain 337 438 IPR044876 -
Glsi04g0616 937 Pfam 3'-5' exonuclease 114 280 IPR002562 GO:0003676|GO:0006139|GO:0008408
Glsi04g0616 937 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 46 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0616 Glsi-ChrGlsi04 4259373 4268594 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0616 04 4259373 4268594 Glsi04g0616 04 4259373 4268594 ECH