Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0536 ATGGGAAGTGCCTCAACATTAGTCTCAGCTGCCATGAGAAGGCTTGAAGGGAAGGTGGCTCTCATCACTGGTGGTGCAAGGGGCATTGGCGAGACCACTGCAAGACTCTTTTCCAAGCACGGAGCTAAAGTGGTGATAGCTGACATCCAAGACGACCTGGGTCACTCTGTTTGCCAAGAATTAACAAATTCATCATCTTCGTCTGCTTTCTATGTCCACTGCGATGTGACGAACGAAAAAGACATCGAAAACGCAGTGAACACAGCAGTTTCCGAACATGGAAAGCTAGACATCATGTTCAACAACGCCGGTATTGTCGGTGAAAAAAAACCCAGCATACTTGAAAACGAAAAGTCCGAGTTTGAGCAAGTCCTCAACGTTAATTTGGTAGGTGCATTTCTGGGAACCAAGCACGCTGCGAGGGTGATGATCCCTGCTCGCCGTGGCAGCATTATCACTACAGCTAGTATTGCTGGAAGTATAGGCGGCGTGACTCCCCACAGCTACACAAGCTCAAAGCATGGTGTGGTGGGGCTGATGAGGAACGCAGCGGTGGAGCTTGGACCACATGGCATTCGGGTGAATTGTGTTTCACCGTATGTGGTTGCCACGCCAATGGCTAAGGATTTCTTCAAGCTTGATGATGAGGGAATTCATGGGATTTATTCTAACCTGAAAGGGACTATTCTTGAGCCAGAAGATGTGGCTGAAGCTGCTCTTTACTTGGGGAGTGACCAGTCCAAGTATGTTAGTGGCCACGATCTTGTGGTTGATGGAGGATTCACCGTTGTAAACGCTGGTTTTTCTATATTTGGGCAATCTCTGTAA 828 0.4819 MGSASTLVSAAMRRLEGKVALITGGARGIGETTARLFSKHGAKVVIADIQDDLGHSVCQELTNSSSSSAFYVHCDVTNEKDIENAVNTAVSEHGKLDIMFNNAGIVGEKKPSILENEKSEFEQVLNVNLVGAFLGTKHAARVMIPARRGSIITTASIAGSIGGVTPHSYTSSKHGVVGLMRNAAVELGPHGIRVNCVSPYVVATPMAKDFFKLDDEGIHGIYSNLKGTILEPEDVAEAALYLGSDQSKYVSGHDLVVDGGFTVVNAGFSIFGQSL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0536 275 Pfam Enoyl-(Acyl carrier protein) reductase 24 262 - -
Glsi04g0536 275 CDD secoisolariciresinol-DH_like_SDR_c 14 262 IPR045309 GO:0016616
Glsi04g0536 275 FunFam Short-chain dehydrogenase reductase 7 266 - -
Glsi04g0536 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Glsi04g0536 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Glsi04g0536 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Glsi04g0536 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 264 IPR036291 -
Glsi04g0536 275 Gene3D - 4 272 - -
Glsi04g0536 275 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Glsi04g0536 275 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Glsi04g0536 275 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Glsi04g0536 275 PRINTS Glucose/ribitol dehydrogenase family signature 225 245 IPR002347 -
Glsi04g0536 275 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Glsi04g0536 275 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
Glsi04g0536 275 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 11 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0536 Glsi-ChrGlsi04 3661270 3662269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0536 15 271 Acyl Lipid Metabolism Gene Families AT3G46170 35.821 1.08e-33 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0536 04 3661270 3662269 Glsi04g0536 04 3661270 3662269 ECH