Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0438 ATGACTATAACCATGGCTCCGATTCCGTCTGAGAACGGCGTCGAAGGAGACTGTGAGAGAGACGAGGAGGAGGGCGAAGAAGAAGAGGAGGAGGGCGACGAAGAGGAAGAGGAGCCGAGACTTAAGTACCAGAGAATGGGAGGTAGCATACCTTCGCTGCTAGCGAGTGATGCGGCGTCGTGTATCGCCGTTGCCGAGCGAATGATCGCACTCGGCACCCACGACGGCACTGTCCGTATCCTTGATTTTCTCGGGAATCAGGTGAAAGAATTCGCTGCTCATGCTGCTGTTGTTAATGACCTTAGCTTTGACCTAGAAGGTGAATATATTGGAAGCTGTTCTGATGATGGATCCGTCGTAATAAACAGCCTATTCACTGGTGAGAAAATGAAATTTGAGTATCATCGACCAATGAAGGTTATTGCCCTGGACCCTTGTTATGCAAGAAAAACATCTAGGAGGTTTGTTGCGGGTGGGTTAGCAGGTCATTTATATTTAAACTCAAAGACATGGTTAGGCTATCGTGATCAGGTTTTGCACTCTGGTGAAGGTCCAATACATGCTGTGAAGTGGAGAACAAGGCTTGTTGCTTGGGCAAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTATAACATTTATTGAGAAACCACGAGGGAGCCCACGCCCTGAGTTTTTGCTTCCTCACTTGGTTTGGCAGGATGACACCCTCTTAGTAATTGGTTGGGGAACATCTGTCAAAATTGCATCAATAAGAACAAATCACCATAAAGCAGCCAATGGGATGCATAGACAAGTCCCCTTGTCTAGTGTGAACCAGGTGGATATTGTGGCATCTTTTCAAACCACCTATTTCATCTCAGGAATTGCCCCCTTTGGTGATGCTTTGGTTGTTCTTGCTTATATTCCTGGAGAAGATGGAGAAAAGGATTTTAGTGGTACTGCTCCTTCACGGCAGGGCAATGCACAAAGACCAGAAATTCGTATAGTAACATGGAACAATGATGAACTTTCAACAGATGCTCTACCAGTACTTGGCTTTGAGCATTACAAGGCAAAGGACTATTCCCTTGCACATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGGGATGAACCACTTTACTATATTGTATCCCCAAAGGATGTAGTTATTGCGAAACCAAGGGATACTGAAGATCATATTGCGTGGCTTCTTCAACATGGGTGGCATGAAAAAGCTCTAGCTGCAGTTGAATCTGGTCAGGGGCGGAGTGAACTTCTTGATGAGGTGGGATCTAGATACCTTGATCATCTAATCGTGGAAAGAAAATATTCTGAAGCAGCTTCTTTGTGTCCCAAATTGCTGCGGGGATCAGCTTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTTCCTGTTTTGGTTCCTTATATGCCTACAGAAAACCCCCGACTGCGTGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATCCATCTTTTCATAAGGATCTCTTGTCCACTGTTAAATCCTGGCCGTCTGTAATTTATTCTGCCTTGCCTGTTATTTCAGCCATTGAACCTCAGCTTAATACTTCATCCATGACTGATGCACTCAAGGAGGCATTAGCTGAGTTATATGTAATTGATGGCCAATATGAGAAAGCCTTTTCACTGTATGCTGATCTTTTGAAACCAGAAATATTTGACTTCATTGATAAACATAATCTACATGAAGCAGTTCGTGAAAAGGTTGTTCAGCTGATGATGCTAGATTGCAAGCGTGCAGTTACTCTATTAATCCAAAACAGGGACTTTATAAGTCCGCCTGAGGTTGTCAAGCAACTTCTGAACGCTGATATTAAGTGTGACTGCAGATATTTCTTACATTTATATCTTCATTCATTATTCGAAGTAAATCCACATGCTGGGAAGGACTTTCATGATATGCAGGTAGAACTTTATGCAGACTATGACCCACAGATGCTGCTGCCATTTCTTCGCAGTAGTCAACACTATACCCTTGAGAAGGCCTACGAAATTTGCATCAAAAGGGATCTATTGAGGGAACAAGTCTTCATCTTAGGAAGGATGGGAAACTCGAAACAAGCCCTTGCTGTTATTATTAATAATTTAGGGGATATAGAGGAGGCCGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAACTAATCAAACAATGTCTTCACAGACCTGAAATGGTAGGCATCCTATTGGAACACACAGTTGGAAATCTTGATCCCCTCTACATTGTTAATAAGGTTCCCAATGGTTTGGAAATACCTCGACTCAGGGATCGGCTGGTTAAAATTATCACTGATTACAGGACTGAAACATCACTTAGACATGGGTGCAATGATATCCTTAAGGCCGACTGTGTCAACCTTTTAATTAAATATTACAAAGAGGCGAGACATGGAGTTTATCTAAGTAATGAAGAAGATGAGCCACGAGCTAAAAGGAGTGATACTTATTCTTCTCAGGTGGTTGAGAAATCTCCCAGTCTGAGAACCATGGAGGTGAAATCAAGGACTACGGGAGGTGGAAGATGTTGTATATGTTTTGACCCCTTTTCTATACGGAATGTATCAGTCATCGTTTTCTTTTGCTGTCATGGGTATCACACAACTTGTCTTGTGGATTCCTCCTACACTAGTAGTAGCAATAAAGAGATTGAAGTGACTTCCGGAGAGGCAGGAACATATGATGTGTACAATGGTCATATGGACGATGATAGCGACGATGAAGAAACCATGATGGGTGGCCCTCGTATGCGTTGTATATTGTGTACTACTGCTGCTAGTTGA 2865 0.4349 MTITMAPIPSENGVEGDCERDEEEGEEEEEEGDEEEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHDGTVRILDFLGNQVKEFAAHAAVVNDLSFDLEGEYIGSCSDDGSVVINSLFTGEKMKFEYHRPMKVIALDPCYARKTSRRFVAGGLAGHLYLNSKTWLGYRDQVLHSGEGPIHAVKWRTRLVAWANDAGVKVYDTANDQRITFIEKPRGSPRPEFLLPHLVWQDDTLLVIGWGTSVKIASIRTNHHKAANGMHRQVPLSSVNQVDIVASFQTTYFISGIAPFGDALVVLAYIPGEDGEKDFSGTAPSRQGNAQRPEIRIVTWNNDELSTDALPVLGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAAVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDALKEALAELYVIDGQYEKAFSLYADLLKPEIFDFIDKHNLHEAVREKVVQLMMLDCKRAVTLLIQNRDFISPPEVVKQLLNADIKCDCRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPQMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVIINNLGDIEEAVEFVTMQHDDELWEELIKQCLHRPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGVYLSNEEDEPRAKRSDTYSSQVVEKSPSLRTMEVKSRTTGGGRCCICFDPFSIRNVSVIVFFCCHGYHTTCLVDSSYTSSSNKEIEVTSGEAGTYDVYNGHMDDDSDDEETMMGGPRMRCILCTTAAS 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0438 954 SMART WD40_4 46 82 IPR001680 GO:0005515
Glsi04g0438 954 SMART WD40_4 84 123 IPR001680 GO:0005515
Glsi04g0438 954 SMART WD40_4 172 208 IPR001680 GO:0005515
Glsi04g0438 954 SMART CLH_2 609 756 IPR000547 GO:0006886|GO:0016192
Glsi04g0438 954 MobiDBLite consensus disorder prediction 1 41 - -
Glsi04g0438 954 CDD RING-H2_Vps8 868 950 - -
Glsi04g0438 954 PIRSF Vps41 4 911 IPR016902 GO:0034058|GO:0046907
Glsi04g0438 954 PANTHER VACUOLAR PROTEIN SORTING VPS41 23 929 IPR045111 GO:0006623
Glsi04g0438 954 Gene3D Tetratricopeptide repeat domain 542 816 IPR011990 GO:0005515
Glsi04g0438 954 Gene3D - 46 294 IPR015943 GO:0005515
Glsi04g0438 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 830 909 IPR013083 -
Glsi04g0438 954 FunFam Vacuolar protein sorting-associated protein 41 homolog 10 282 - -
Glsi04g0438 954 SUPERFAMILY WD40 repeat-like 56 264 IPR036322 GO:0005515
Glsi04g0438 954 FunFam Vacuolar protein sorting-associated protein 41 homolog 550 815 - -
Glsi04g0438 954 SUPERFAMILY RING/U-box 869 907 - -
Glsi04g0438 954 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 609 756 IPR000547 GO:0006886|GO:0016192
Glsi04g0438 954 Pfam Region in Clathrin and VPS 610 752 IPR000547 GO:0006886|GO:0016192
Glsi04g0438 954 Coils Coil 18 38 - -
Glsi04g0438 954 SMART ring_2 870 949 IPR001841 -
Glsi04g0438 954 MobiDBLite consensus disorder prediction 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0438 Glsi-ChrGlsi04 2901962 2919286 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0438 04 2901962 2919286 Glsi04g0438 04 2901962 2919286 ECH