Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0435 ATGTCAATAGCGTCAGAGCAGGAAGACCTAACACAAATTAAAGAAGGAAATGGGAAGCTGAATCTAATTGGAGCACATGAGATCATGAAGGAAGAGGAAGAGTGCAAAACCCCAACTCGTTCAGGCAACCGAATACTAGCAATTCAAAATTGCCCTCCTGCGCCTAGAAAGAGAAGACGACCTAGTCCTCCAGCTGCTGCACCATCTTCGCTCTTGAGAAGATCATTCACCGCTCATGAGTTGAACTTCTTCGAAGATACAAGGCTTGAAGAGGTAGAGTCTTTTTTCCAATCCATCTCCGTGCATGAGTCTTCTAGGGTTAACAAGAGATGAAGCTTGAGGGAGAGAGAATTGAAGCGAGACTCAATGGCTCCAAAGCGTGATGAGAAAGTCGTGGTAAGATCCACCAGGAAACTTGTGCAAGAAACAGTGCAGGTTTCGGTTGTTAGCAGCAGCAAAAGATTAACCAGAGGAAACAAAGATACCCTGAAAGATGAAGAAGGAACCACTTCAAGCCAAGAGCATGTGAGGACCATTCCTGTTCAAGAAGTGACTCCACAAACCCCAGAGATTGCAAGCACCACTCAGAAAGATCCTGAAGAAGATCACACTCAAAATGGTGAAGTCCCTCGAGCAGAAAAGCAAAAGAAAGGTAAGCCCCGAGAAGGGAATATTGATGGAAAAGAGAAAATTAGGAAGAGAAAGAGGAGTAAGAGAAGTGGAGAAGGGTACCGGAGATACGTGTACAAGGTATTGAAGCAAGTGCACCCTGAGATGGGGATCTCATCCAAGGCCATGACTGTTGTGAACAATCTGATGAATGACATGTTTGAGAGGCTTGCCGATGAGGCTGCCAAACTGAAGACATACACAGGGCATATGACATTGTCGTCAAGGGAGATCCAAGGGGCAGTGAAGCTGGTTCTGCCTGGAGAGCTTGGGAAGCATGCCATTGCTGAGGGGGCCAAAGCTGTGACTACCTACATGTCCAACGATGTCCGTTAG 1005 0.4647 MSIASEQEDLTQIKEGNGKLNLIGAHEIMKEEEECKTPTRSGNRILAIQNCPPAPRKRRRPSPPAAAPSSLLRRSFTAHELNFFEDTRLEEVESFFQSISVHESSRVNKRXSLRERELKRDSMAPKRDEKVVVRSTRKLVQETVQVSVVSSSKRLTRGNKDTLKDEEGTTSSQEHVRTIPVQEVTPQTPEIASTTQKDPEEDHTQNGEVPRAEKQKKGKPREGNIDGKEKIRKRKRSKRSGEGYRRYVYKVLKQVHPEMGISSKAMTVVNNLMNDMFERLADEAAKLKTYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGAKAVTTYMSNDVR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0435 334 PRINTS Histone H2B signature 285 302 IPR000558 GO:0000786|GO:0003677|GO:0030527
Glsi04g0435 334 PRINTS Histone H2B signature 244 262 IPR000558 GO:0000786|GO:0003677|GO:0030527
Glsi04g0435 334 PRINTS Histone H2B signature 263 283 IPR000558 GO:0000786|GO:0003677|GO:0030527
Glsi04g0435 334 PRINTS Histone H2B signature 315 328 IPR000558 GO:0000786|GO:0003677|GO:0030527
Glsi04g0435 334 PRINTS Histone H2B signature 302 315 IPR000558 GO:0000786|GO:0003677|GO:0030527
Glsi04g0435 334 Pfam Core histone H2A/H2B/H3/H4 193 307 IPR007125 GO:0003677
Glsi04g0435 334 SMART h2b3 234 330 IPR000558 GO:0000786|GO:0003677|GO:0030527
Glsi04g0435 334 MobiDBLite consensus disorder prediction 151 239 - -
Glsi04g0435 334 FunFam Histone H2B 209 331 - -
Glsi04g0435 334 PANTHER HISTONE H2B 215 330 IPR000558 GO:0000786|GO:0003677|GO:0030527
Glsi04g0435 334 MobiDBLite consensus disorder prediction 195 230 - -
Glsi04g0435 334 Gene3D Histone, subunit A 201 332 IPR009072 GO:0046982
Glsi04g0435 334 MobiDBLite consensus disorder prediction 36 71 - -
Glsi04g0435 334 MobiDBLite consensus disorder prediction 173 194 - -
Glsi04g0435 334 MobiDBLite consensus disorder prediction 157 172 - -
Glsi04g0435 334 SUPERFAMILY Histone-fold 217 330 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0435 Glsi-ChrGlsi04 2852606 2854934 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0435 04 2852606 2854934 Glsi04g0435 04 2852606 2854934 ECH