Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0309 ATGTATTCTTTTGGTAGAAATTGCTTGAAATGTCTTGGCTGCGTCAGATGGAATTGTTTGAATCATCTATGCGCTGAAAACTCATTTTGGTCGCAATTTCATGAATCAGCTGTGCTAAATAATCTCATTGAACAAAAGTCTAAGAAGATTTATACTCTTTATTTTACTCAGAAAATTGACCCCTTTTTCCAAATTGCTTCTAGTAAAATTCCAGGCCTGTCTCCGCACATTTTCTTTGGTTCTCATTATTCAACCAAGCCACCTTCAAGATCATTTCGAAGAAGAGCCCGTAAGAGATTGTTAAAATCCTTGAAGCCTACTCTAGACCAAGCCCAATTTCAATTGGCCTTGTCCCAACTTCCCCCAAGGTTCACTCCTGAAGAACTCTGCAATGTAATTACTTTTCAAGAAGACCCATTAGTTTGTTTGGAGCTATTTACTTGGGCATCGCAACAACCCAGGTTTCGGCATAATGTATTAACTTATCATATAACCATACAGAAGCTCGGTGCGGCAAAAATGTACCAAGAAATGGATGACATTGTCAACCAAGTGCTCGCAGTTCCATTAATTGGTTCGGAGGCACTTTACAATACCATTATATATTATTTCACTGAAGCTCGAAAGCTAACTAGAGCCGTAAATATATTTAACCACATGAAAAGTAGTCGAAATTTGAATTGCAGGCCTTCTATCAGAACCTATAATCTTCTTTTTGCGGCACTGTTGAGTAGAGGAAGTAACTCTTACATAAATCATGTGTATATGGACACTACTAGATGTCTGTTTAAGCAAATGGTCAACGACGGGATAGAGCCTGATATATTTTCTTTGAATTTCATGATTAAAGGTTATGTGCTTTCGAATCATGTTAATGATGCACTGAGGATATTCCATCAGATGGGCGTGGTTTATGTTTGCCAGCCCAATTCATTTACCTATGATTATTTGATACATGGGTTGTGTGCCCAAGGAAGAACAAAGAATGCTGAAGAATTATGTCATGAAATGAAGACCAAAGGCTTCACCCCTAGTAGTAAATCTTATAATTCGCTTATCAATGCTTTAGCACTTGGTGGAGAGGTTGAGAAGGCTGTAAATCATCTCTGGGAGATGACCGAAAAATGGAGGTCTGCTGATTTTATTACATATAGGACTGTGCTGGACGAGATATGCAGACAAGGAAGAGTTCAGGAGGCAATGAGGTTACTGCAGGAGTTGCAAGAGAAGGACCTTGTGGATGGACATGCTTACAACAAGCTTCTTTATGTGCTTGAAGATGACTATGGGACTTCAATTAGCAGAATTGATTCAGGTACTGAGCCGTCTTTCTATGTAAACAGAGAATTGGCTATGATACTTGAGAACCGCTCCTCCGAGGTAGCTGGACATGCTACTGTCTTCTATATCATGATTGATTATTGGCCTTGCAATGAACTATTCATGGAAGCAAAATTCTGGCAAAATGGTTATGCAAATGTTGTGTAA 1488 0.3891 MYSFGRNCLKCLGCVRWNCLNHLCAENSFWSQFHESAVLNNLIEQKSKKIYTLYFTQKIDPFFQIASSKIPGLSPHIFFGSHYSTKPPSRSFRRRARKRLLKSLKPTLDQAQFQLALSQLPPRFTPEELCNVITFQEDPLVCLELFTWASQQPRFRHNVLTYHITIQKLGAAKMYQEMDDIVNQVLAVPLIGSEALYNTIIYYFTEARKLTRAVNIFNHMKSSRNLNCRPSIRTYNLLFAALLSRGSNSYINHVYMDTTRCLFKQMVNDGIEPDIFSLNFMIKGYVLSNHVNDALRIFHQMGVVYVCQPNSFTYDYLIHGLCAQGRTKNAEELCHEMKTKGFTPSSKSYNSLINALALGGEVEKAVNHLWEMTEKWRSADFITYRTVLDEICRQGRVQEAMRLLQELQEKDLVDGHAYNKLLYVLEDDYGTSISRIDSGTEPSFYVNRELAMILENRSSEVAGHATVFYIMIDYWPCNELFMEAKFWQNGYANVV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0309 495 Pfam PPR repeat 380 406 IPR002885 -
Glsi04g0309 495 Pfam PPR repeat family 309 357 IPR002885 -
Glsi04g0309 495 Pfam PPR repeat family 196 242 IPR002885 -
Glsi04g0309 495 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 156 374 - -
Glsi04g0309 495 Gene3D Tetratricopeptide repeat domain 86 253 IPR011990 GO:0005515
Glsi04g0309 495 Gene3D Tetratricopeptide repeat domain 254 435 IPR011990 GO:0005515
Glsi04g0309 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Glsi04g0309 495 NCBIfam pentatricopeptide repeat 277 310 IPR002885 -
Glsi04g0309 495 NCBIfam pentatricopeptide repeat 382 412 IPR002885 -
Glsi04g0309 495 NCBIfam pentatricopeptide repeat 312 345 IPR002885 -
Glsi04g0309 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Glsi04g0309 495 Pfam PPR repeat 277 301 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0309 Glsi-ChrGlsi04 1996065 1999078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0309 158 442 Glycosyltransferase AT1G05670 21.053 7.52e-15 75.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0309 04 1996065 1999078 Glsi04g0309 04 1996065 1999078 ECH