Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0274 ATGTATAGAGCGCGAGCTGAAGGCATAACCTTCACGAAGGAACCGTACATCGAGGATGTAGGGCCGCGCAGAATAAAGAGTATGAAATTCACTCCGTTATCAGAGTCAGAGATCAGCAAAATTGCCGAAGTTCAAGTATGGAAAGGTTCATACTATGATCAAACTAAAAAGCCAATCGAGGGTGGCTTGTTGGATCCCCGCATGGGCCCTGCTAATAAGAATTGCACATGTACAACATGCCATGGGAACTTTGCTGATTGTCCAGGGCACTACGGATACTTAAACCTTGCTCTTCCTGTTTACAATGTTGGATACTTAAGTACCATCATAGCAATATTGAAGTGCATCTGTAAGGGTTGTGCTCGTATACTGCTTGATGAAGATTCCTGTAAAGAACGCTTGAAGAAGATGAGAAGTCCCAAAATAGAGCCTCTTAGGAAGATTGCTATAGCGAAAAGTCTTATTGATAGATGTAGTGCCATGTCAAGTAATAGCAAAGCAGTGAAGTGTCTGAGATGTGGATTTATCAACGGTCCAGTAAAGAAGGCTGTGTCTGTGCTAGGCATTATTCATGATTCTTCCAAATGTAATGATGGTAGTGTGGAAGAGTTCCGATCAGCAATTTCTCATACAAAAGAGTCTAAGGCAGCTATCAACTTGACTACTCATGTTCTTAATCCTTTCAGAGTTCTTTCCCTCTTTAAAAGGATGCTTGATGAGGACTGTGAATTACTTTATCTTGCAGACAGACCAGAGAAGCTCATTATAACAAACATTGCTGTGCCGCCTATTGCTATTCGACCCTCAGTTATAATGGATGGGTCACAGAGCAATGAAAATGACATAACAGAGAGGCTAAGGCAAATAATTCAAGCAAATGCTAACCTCCGCCAAGAGTTACAGGAAGCAAGCGGGGCATTCAAATGTCTGGATGGCTGGGAAGTACTTCAAGTTGAGGTTGCTCAATTCATAAATAGTGATGTTCGTGGTGTTCCATTTAATATGCAACGTGCCAAGCCATTGGGTGGCTTTGTACAGCGCCTTAAAGGAAAGCAGGGGCGTTTCCGTGGCAACTTATCTGGGAAACGTGTTGAATATACTGGCAGGACTGTTATTTCACCAGATCCTAATCTGAAGATTTCTGAGGTTGCAATACCGATCCATATGGCTCGTATATTAACTTTTCCCGAGTGTGTTTCACATCACAACATAGAGAAGTTGAGACAATGTGTAAGAAATGGCCCTGATAAGTATCCTGGCGCAAGGTTGCTTAGGCATGTTGGAGGTCCCACAAGGTCCTTAAAAGTTTCTTTTAGGAAGCGCCTTGCAGATGAACTAAGATTTGGTGATATTGTTGATCGTCATTTGGAAGATGGAGACATTGTTCTTTTCAATAGACAACCAAGCTTGCATCGGATGTCTATCATGTGTCATAGGGCTAGGGTTATGCCGTGGAGAACTTTGAGATTCAATGAATCTGTCTGTAACCCATATAATGCTGACTTTGATGGTGATGAGATGAATTTACATGTCCCACAGACTGAGGAGGCTCGAACAGAGGCTGTTTTGTTGATGGGGGTGCAAAACAATTTATGCACACCAAAAAATGGAGAAATTCTGGTTGCCTCTACTCAAGACTTCTTAACCTCTTCCTTTCTCATAACAAGGAAAGATACTTTTTATGATCGTTCGACTTTTTCACTTATTTGCTCATACATGGGCGACGGCATGGATCTTGTTGATCTGCCAACTCCAGCGATTATTAAGCCCGTAGAGCTTTGGAGTGGTAAACAGTTATTTAGCATTCTAATTCGCCCACATGCAAGTGTGAGGGTCTATGTGAGTCTCACAGTTAAGGAGAAGACCTACAGCACAAAGCTTGATGACAGGAAAAGAGAATTGAAAACAATGTGCCCCAATGATGGATTTGTTTATTTTCGCAATAGTGAGTTGATCTCCGGGCAACTTGGAAAGGTTACTTTAGGAAATGGAAATAAGGATGGACTTTTCTCTGTTCTACTAAGAGACTATAAAGAACATGCTGCTGCTGCTTGCATGAACCGCCTAGCTAAGCTGAGTGCTCGATGGATAGGCAATCATGGGTTCTCCATAGGCATTGATGATGTTCAACCAAAAGAGATATTGACCAACAAGAAGGATGAAACAATTTCAGATAATTATAAAAAATGTGATGATTTTATAGAGGCTTTCAATAATGGAAAGCTGGAACTCAAAGCTGGTTGTGATGCTGCTCAAACATTAGAGGCTTTAATAACTGGTGTATTAAATGGCATACGAGATACAGCAGGGAAGGTTTGCATGCAAACGCTACACTGGCGAAATAGTCCCTTGATCATGTCACAATGTGGATCCAAAGGATCTCCTATAAATATTAGCCAAATGGTAGCATGTGTTGGTCAACAGTCAGTTGGAGGTCGTCGTGCTCCCAATGGGTTCATAGATCGGAGCCTTCCTCATTTCCCCAGAAAAGCAAAAACCCCTGCAGCTAAAGGTTTTGTTGCTAATTCCTTCTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACTGCGGTGAAAACTGCTGACACTGGTTACATGTCTCGCCGATTAATTAAAGCTTTGGAGGATTTGTTTGTCCATTATGATAACACTGTAAGAAATGCCGGTGGTTGTGTTGTTCAATTTCGTTATGGAGATGATGGCATGGATCCAGCAGGCATGGAAGGAAAAGATGGAAAACCTTTAAATTTTGACCGGTTGTTTATGAGAAGCAAGGCAATTTGTCCCACTGATGGAGATGATGAAATACTATCTTCCTTGGATTTGTGTAAAGTAGTGCAAGACAAACTTTCAGAAGTTGGTATGTCTAAGATGGTGGAGAAAAGGATTTCAGAGGATGATAATTCGGAGGTGGTTTGCTCTGCTGATTTCATAAATTCGCTACAATCCTTCATAAAAAAGAATACAGACTGCTTAGTGGAAACAAATGAAACTTCCACTGAGGATGATTCTAGAAATCAGAAAAAATTTGTTCAGAGGATATCGGGTGTTACTCATAGGCAGCTTGAGGTTTTTCTGGATATATGTCTTTCCCGTTATCGTTCAAAAAAAATTGAGGCTGGAACTCCAATTGGTGCAATTGGAGCTCAAAGTATCGGAGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAATGTTACTCTGGGAGTTCCTCGTATTAAAGAAATAATAAATGGAGCCAAAAAAATCAGTACACCCATCATCACTGCAATACTTGAGAGTGATGATAATGCAAACACTGCAAGGATGGTAAAAGGTCGCATCGAGAAAACAAATTTGGGCCAGATAGCAAAGAGCATAAAAATTGTGATGACCTCAAGATTAGCATCAGTTGTTATCACACTTGACATGGAAAGAATCCAAGATGCACAATTGAATATAGATGCTAATATTGTAAAGGAATCAATTTTGCAAACCCCAAAAATAAAATTGAAGCAAGAGCACATTAAGGTTTTGGATATCAAAAAGCTCGAAGTTGTTCCCCAAGATGCTGACAGAAGTAAAATCCATTTTCAACTGAACTACCTCAAAAATTTGCTTCCATCAGTTGTAGTAAAGGGAATTAAAACTGCTGATCGTGTTGTTATCAGTAAAGAAGAAGATAAAGCAGCAAAGATTGAAAAGTTCAAATTATTGGTAGAAGGCACCGGCCTTCAAGAGGTTATGGGCATTGAAGGGGTTGATGGACGCAAAACACTTAGTAATCATGTCATTGAAGTGCAGCAGACTCTAGGAATTGAAGCAGCTAGAAAGTGTATCATTGAAGAGATAAAGTTTACAATGGGAAGCCATGGAATGAGTATAGACATACGCCATATGATGCTTTTAGCAGATGTGATGACCTTCAGGGGTGAAGTCCTTGGAATAACAAGATTTGGAATACAAAAAATGGATAAAAGTGTGTTAATGCTGGCATCATTTGAGAAGACTGCAGATCACCTTTTCAATGCTTGTGTACATGGGAGGGATGACCAGATCGAAGGAGTAACTGAGTGCATAATCATGGGTATACCTATTCAGATAGGTACTGGAATGATCAAAGTCAAACAAAGGTTGGATCCTCCTGCATTGCCTCAAGGGGCCGATCCTATACTGTCTTAA 4218 0.4078 MYRARAEGITFTKEPYIEDVGPRRIKSMKFTPLSESEISKIAEVQVWKGSYYDQTKKPIEGGLLDPRMGPANKNCTCTTCHGNFADCPGHYGYLNLALPVYNVGYLSTIIAILKCICKGCARILLDEDSCKERLKKMRSPKIEPLRKIAIAKSLIDRCSAMSSNSKAVKCLRCGFINGPVKKAVSVLGIIHDSSKCNDGSVEEFRSAISHTKESKAAINLTTHVLNPFRVLSLFKRMLDEDCELLYLADRPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLRQIIQANANLRQELQEASGAFKCLDGWEVLQVEVAQFINSDVRGVPFNMQRAKPLGGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKISEVAIPIHMARILTFPECVSHHNIEKLRQCVRNGPDKYPGARLLRHVGGPTRSLKVSFRKRLADELRFGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAVLLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDLVDLPTPAIIKPVELWSGKQLFSILIRPHASVRVYVSLTVKEKTYSTKLDDRKRELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKEHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPKEILTNKKDETISDNYKKCDDFIEAFNNGKLELKAGCDAAQTLEALITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLFVHYDNTVRNAGGCVVQFRYGDDGMDPAGMEGKDGKPLNFDRLFMRSKAICPTDGDDEILSSLDLCKVVQDKLSEVGMSKMVEKRISEDDNSEVVCSADFINSLQSFIKKNTDCLVETNETSTEDDSRNQKKFVQRISGVTHRQLEVFLDICLSRYRSKKIEAGTPIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKKISTPIITAILESDDNANTARMVKGRIEKTNLGQIAKSIKIVMTSRLASVVITLDMERIQDAQLNIDANIVKESILQTPKIKLKQEHIKVLDIKKLEVVPQDADRSKIHFQLNYLKNLLPSVVVKGIKTADRVVISKEEDKAAKIEKFKLLVEGTGLQEVMGIEGVDGRKTLSNHVIEVQQTLGIEAARKCIIEEIKFTMGSHGMSIDIRHMMLLADVMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNACVHGRDDQIEGVTECIIMGIPIQIGTGMIKVKQRLDPPALPQGADPILS 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0274 1405 Gene3D - 1338 1392 - -
Glsi04g0274 1405 FunFam DNA-directed RNA polymerase II subunit RPB1 438 534 - -
Glsi04g0274 1405 SMART rpolaneu7 252 555 IPR006592 GO:0003677|GO:0003899|GO:0006351
Glsi04g0274 1405 FunFam DNA-directed RNA polymerase subunit 16 138 - -
Glsi04g0274 1405 Gene3D - 352 534 - -
Glsi04g0274 1405 Gene3D RNA polymerase ii 394 454 - -
Glsi04g0274 1405 Gene3D - 709 826 IPR038120 -
Glsi04g0274 1405 Pfam RNA polymerase Rpb1, domain 4 735 840 IPR007083 GO:0003677|GO:0003899|GO:0006351
Glsi04g0274 1405 Pfam RNA polymerase Rpb1, domain 3 530 709 IPR007066 GO:0003677|GO:0003899|GO:0006351
Glsi04g0274 1405 Gene3D RNA polymerase II, clamp domain 15 137 IPR044893 -
Glsi04g0274 1405 Gene3D RNA polymerase Rpb1, domain 3 535 708 IPR042102 -
Glsi04g0274 1405 FunFam DNA-directed RNA polymerase subunit 709 826 - -
Glsi04g0274 1405 CDD RNAP_III_RPC1_N 33 897 IPR035697 -
Glsi04g0274 1405 Gene3D - 827 885 - -
Glsi04g0274 1405 FunFam DNA-directed RNA polymerase subunit 535 708 - -
Glsi04g0274 1405 Coils Coil 279 306 - -
Glsi04g0274 1405 Pfam RNA polymerase Rpb1, domain 1 23 359 IPR007080 GO:0003677|GO:0003899|GO:0006351
Glsi04g0274 1405 FunFam DNA-directed RNA polymerase subunit 1340 1385 - -
Glsi04g0274 1405 Pfam RNA polymerase Rpb1, domain 2 361 527 IPR000722 GO:0003677|GO:0003899|GO:0006351
Glsi04g0274 1405 CDD RNAP_III_Rpc1_C 1043 1385 IPR035698 -
Glsi04g0274 1405 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 17 1390 - -
Glsi04g0274 1405 Gene3D - 886 937 - -
Glsi04g0274 1405 PANTHER DNA-DIRECTED RNA POLYMERASE 30 1389 IPR045867 GO:0003899|GO:0006351
Glsi04g0274 1405 Pfam RNA polymerase Rpb1, domain 5 847 1340 IPR007081 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0274 Glsi-ChrGlsi04 1741992 1775676 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0274 04 1741992 1775676 Glsi04g0274 04 1741992 1775676 ECH