Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0107 ATGCTGAGGCTTCAGATTAACCAGTCAAGTTGCAACCCTATTTTCCATCTTCTATTTCAGAAGCCATTGGTAAGTCTGCATGGCAACAGTTGTCCTCCAATTCTGGCATCGTCATGCCCGTCATTCCAAAACCAAAAGAAACAGAACAGAGTCAGGGTTGGGTGCACGAGCAACACCAACATCAAAGCTGTGGCCGTGAGTGAAGCAGAAAAGACCAATTCCGTAAAGGTTAAAGTCACACTAACTGTTCTGCGAACTGTCGGTGGATATTTCACAGAACTGGGTTTAGACCGAGGCCTCGATGATATAAAGGAAGTTCTGGGTAAATCACTTCTCTTGGAGCTTGCTAGCACCGAGCTTGATCCCAAGACGGGACTAGAAAAGGACCACATCAAAGGTTTCGTGCACAGGACGGATCAAGAAGGAGATGAGGTGAAGTATGAGACTGAATTTGAAGTGCCAGGTGATTTTGGAGAGATCGGCGCCATTCTTGTGGAGAATGAACACCACAAAGAGATGTTCTTCAAGGATGTGGTCCTTGATGGTTTTCTCACTGGTCCCCTTCGCTTTTCTTGTAACTCTTGGGTTCATTCCAAGTCCGATAACGCCGTTAAGAGGGTGTTCTTCAGTAACAAGTCATACTTGCCATCAGATACTCCGGAAGGAATAAAGAGGCTAAGAGAAGAGGAATTGGTAATATTAAGGGGGAACGGGCAAGGTGAACGCAAGAGCTATGAGCGAATTTACGATTATGATGTGTACAATGACCTTGGAAACCCTGACAGCAACGACGACCTCAAGAGACCCGTTCTTGGTGGCAAGCAAAACCCATATCCAAGGCGTTGCAGAACCGGACGTCCACGCAGTGAAAAAGATCCACTGTCAGAGAAAAGAAGTAGCAACGTGTATGTGCCTAGGGACGAATGCTTCTCAGAAGTGAAGCAGCTAACGTTTTCTACAAATACGGTATACTCGGTGTTGCATGCGGTCGTACCGGCGCTACAGACCACGTTAATTGACAAGGATCTTGGGTTTCCTTTTTTCTCATCCATAGACTCCCTTTTCAACGAAGGGATTAACTTGCCTCCACTTAAATCCAAAGGCTTTCTCACAACCATTGTGCCAAGGCTAGTTAAGGCTATTACTGATGTTGAGAATGATATTCTCCGTTTTGAGACTCCCGCAACCATGGAGAGGGACAGGTTCTTTTGGTTTAGGGACGAAGAATTTGCCAGGCAGACTCTTGCAGGTCTCAACCCATGTTGCATACAATTGGTCACGGAATGGCCACTGAAAAGTACACTTGACCCCGAGATTTATGGCCCACAAGAATCGGCAATCACCACAGAAATAGTCGAGCAGGAAATAAGAGGTTTTGTGACCATTGAAGAGGCCATAAAACAGAAGAAGCTATTCATCCTAGACTACCATGATTTGTTATTACCATTTGTGGAGAAAATTAGACAACTAGAAGGCACGACTCTATATGGATCAAGGACCTTGTTCTTCCTAACCCCAGACGGCACATTGAGGCCGTTGGCTATCGAGCTAACTCGGCCACCAATGGATGGGAAGCCACAGTGGAAGCAAGTGTTTACACCTGCTTGGCACTCAACCGGTGTTTGGCTATGGAGGCTTGCCAAAGCTCATGTCCTTGCCCATGACTCTGGCTACCATCAACTTGTTAGTCACTGGCTACGAACTCATTGTGCTACAGAACCTTATATCATTGCAACAAACAGGCAACTTAGTGCAATGCACCCTATCTATAGGCTGCTACACCCGCATTTTAGGTACACAATGGAGATCAATGCTCTTGCTCGAGAAGCACTCGTAAATGCCGACGGTATAATAGAGACTAGCTTCTCACCTGGAAAGTACTCCATCCAACTTAGCTCGGTTGCCTATGACAAGCAGTGGCAATTCGACTTGCAAGCCCTCCCAGCAGATCTAATTAACAGGGGAATGGCCGTGGAGGACCCAAATGCTCCTCACGGCTTAAAGCTAACCATCGAAGACTACCCTTATGCCAACGATGGCCTCATTCTTTGGGACACTATCAAACAATGGGTCACCGACTATGTGAACCGCTACTACCCAGAGCCAAATCTGGTTGAATCTGACCAGGAGTTGCAAGCATGGTGGGAAGAGATCCGAACCGTAGGCCATGCTGACAAAAAGGACGAACCTTGGTGGCCGGTTCTTAAAACCCCCGAGGATCTCGTTCACATCGTGACCACCATTGTGTGGATATCATCGGGTCACCACGCGGCGGTGAACTTCGGCCAATACACATACGCAGGGTATTTCCCCAACAGGCCCACGATTACAAGAACGAACATGCCTACGGAGGACCCATCAGACCCGGAATGGGAGCTGTTCATGGAAAAACCAGAAGTGGCACTATTGAGGTGCTTCCCATCTCAAGTTCAGGCGACGACGGTGATGGCAGTGCTGGACATTCTGTCAAGTCACTCACCAGATGAAGAATATCTCGGGCAAAACATAGAGCCATCGTGGGAAGAGGATCCGATTGTGAAAGCGTCGTTTGAAAAGTTTCGAGGGAAGTTGCAAGAGCTGGAAGGGGAGATTGATTTAAGGAATGCAGATAGGAACCTGAGGAACCGAAACGGTGCTGGGATTGTGCCGTATGAGCTATTGAAGCCGGTTTCTGAGGCAGGAGTGACAGGACAGGGAGTTCCATATAGCATCTCCATTTGA 2721 0.4756 MLRLQINQSSCNPIFHLLFQKPLVSLHGNSCPPILASSCPSFQNQKKQNRVRVGCTSNTNIKAVAVSEAEKTNSVKVKVTLTVLRTVGGYFTELGLDRGLDDIKEVLGKSLLLELASTELDPKTGLEKDHIKGFVHRTDQEGDEVKYETEFEVPGDFGEIGAILVENEHHKEMFFKDVVLDGFLTGPLRFSCNSWVHSKSDNAVKRVFFSNKSYLPSDTPEGIKRLREEELVILRGNGQGERKSYERIYDYDVYNDLGNPDSNDDLKRPVLGGKQNPYPRRCRTGRPRSEKDPLSEKRSSNVYVPRDECFSEVKQLTFSTNTVYSVLHAVVPALQTTLIDKDLGFPFFSSIDSLFNEGINLPPLKSKGFLTTIVPRLVKAITDVENDILRFETPATMERDRFFWFRDEEFARQTLAGLNPCCIQLVTEWPLKSTLDPEIYGPQESAITTEIVEQEIRGFVTIEEAIKQKKLFILDYHDLLLPFVEKIRQLEGTTLYGSRTLFFLTPDGTLRPLAIELTRPPMDGKPQWKQVFTPAWHSTGVWLWRLAKAHVLAHDSGYHQLVSHWLRTHCATEPYIIATNRQLSAMHPIYRLLHPHFRYTMEINALAREALVNADGIIETSFSPGKYSIQLSSVAYDKQWQFDLQALPADLINRGMAVEDPNAPHGLKLTIEDYPYANDGLILWDTIKQWVTDYVNRYYPEPNLVESDQELQAWWEEIRTVGHADKKDEPWWPVLKTPEDLVHIVTTIVWISSGHHAAVNFGQYTYAGYFPNRPTITRTNMPTEDPSDPEWELFMEKPEVALLRCFPSQVQATTVMAVLDILSSHSPDEEYLGQNIEPSWEEDPIVKASFEKFRGKLQELEGEIDLRNADRNLRNRNGAGIVPYELLKPVSEAGVTGQGVPYSISI 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0107 906 FunFam Lipoxygenase 421 555 - -
Glsi04g0107 906 MobiDBLite consensus disorder prediction 283 300 - -
Glsi04g0107 906 Pfam PLAT/LH2 domain 138 209 IPR001024 GO:0005515
Glsi04g0107 906 MobiDBLite consensus disorder prediction 260 300 - -
Glsi04g0107 906 SUPERFAMILY Lipoxigenase 215 906 IPR036226 -
Glsi04g0107 906 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 213 906 IPR013819 GO:0016702|GO:0046872
Glsi04g0107 906 SMART LH2_4 75 211 IPR001024 GO:0005515
Glsi04g0107 906 PANTHER LIPOXYGENASE 75 906 IPR000907 GO:0016702|GO:0034440|GO:0046872
Glsi04g0107 906 ProSitePatterns Lipoxygenases iron-binding region signature 2. 586 596 IPR020834 GO:0016702|GO:0046872
Glsi04g0107 906 Gene3D - 233 331 - -
Glsi04g0107 906 Gene3D - 556 904 - -
Glsi04g0107 906 PRINTS Plant lipoxygenase signature 428 447 IPR001246 GO:0016491
Glsi04g0107 906 PRINTS Plant lipoxygenase signature 389 405 IPR001246 GO:0016491
Glsi04g0107 906 PRINTS Plant lipoxygenase signature 342 363 IPR001246 GO:0016491
Glsi04g0107 906 PRINTS Plant lipoxygenase signature 206 227 IPR001246 GO:0016491
Glsi04g0107 906 PRINTS Plant lipoxygenase signature 277 296 IPR001246 GO:0016491
Glsi04g0107 906 PRINTS Plant lipoxygenase signature 819 833 IPR001246 GO:0016491
Glsi04g0107 906 PRINTS Plant lipoxygenase signature 180 198 IPR001246 GO:0016491
Glsi04g0107 906 PRINTS Plant lipoxygenase signature 245 261 IPR001246 GO:0016491
Glsi04g0107 906 PRINTS Plant lipoxygenase signature 496 520 IPR001246 GO:0016491
Glsi04g0107 906 Gene3D PLAT/LH2 domain 73 232 - -
Glsi04g0107 906 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 75 214 IPR036392 GO:0005515
Glsi04g0107 906 Gene3D - 421 555 - -
Glsi04g0107 906 CDD PLAT_LH2 75 211 IPR042057 -
Glsi04g0107 906 ProSiteProfiles PLAT domain profile. 90 210 IPR001024 GO:0005515
Glsi04g0107 906 ProSitePatterns Lipoxygenases iron-binding region signature 1. 559 573 IPR020833 GO:0016702|GO:0046872
Glsi04g0107 906 Gene3D - 333 420 IPR027433 -
Glsi04g0107 906 FunFam Lipoxygenase 538 905 - -
Glsi04g0107 906 PRINTS Lipoxygenase signature 559 576 IPR013819 GO:0016702|GO:0046872
Glsi04g0107 906 PRINTS Lipoxygenase signature 541 558 IPR013819 GO:0016702|GO:0046872
Glsi04g0107 906 PRINTS Lipoxygenase signature 579 599 IPR013819 GO:0016702|GO:0046872
Glsi04g0107 906 Pfam Lipoxygenase 222 889 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0107 Glsi-ChrGlsi04 833288 837979 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0107 153 906 Acyl Lipid Metabolism Gene Families AT3G45140 61.082 0.0 981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0107 04 833288 837979 Glsi04g0107 04 833288 837979 ECH