Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0034 ATGAAGCAAGCCCATCAAACTCCATCTCCAAGTATGAGGATGATTGTTGTGGTAGGGATAATAATAGGGTTAGTAGCGGTAGCCAAAAATGTGAGTGCTCAAAATTGTGGGTGCGCAGCAACGGGGTTATGTTGCAGCCAATACGGGTATTGTGGAACGGGTGATGACTATTGTGGCACGGGGTGCAAAGAGGGCCCTTGTTACGGCACTTCTGGTAGCAACGATGTTTCGGTGGCTGACATCGTCACCCCGGACTTCTTCAATGCTATAATTGATGAAGCTGATGATTCTTGCGCTGGCAAGAACTTCTACTCTCGAGATGCCTTCCTTGATGCTCTCAATTCCTACAATCAATTCGGGAGACTTGGTTCTGTTGATGACTCCAAGCGTGAAATTGCTGCTGCTTTTGCCCATTTCACCCATGAAACTGGACATTTTTGCTACATAGAAGAGATAGATGGTCCGTCAAAGGACTACTGTGACGAAAGCAACACACAGTACCCATGCGCCCCCAACAAAGGGTACTACGGCCGTGGACCCATTCAGCTATCCTGGAACTTCAACTACGGACCAGCCGGAGAGAGCAATGGGTTCGATGGATTGAACTCTCCTGAAACGGTGGCCAATGACCCTGTGGTGTCCTTCAAGACCGCCTTATGGTACTGGATGCAAAATGTGCGCCCAGTTATCAACCAAGGCTTTGGCGCAACCATTAGAGCCATCAATGGCCAACTCGAATGTGATGGTGCTAACCCCGACACTGTTCGGGCTAGGGTTAATTACTACACCCAATACTGTTCACAACTGGGTGTTGCTCCCGGTGATAACCAATCTTGCTAG 840 0.4893 MKQAHQTPSPSMRMIVVVGIIIGLVAVAKNVSAQNCGCAATGLCCSQYGYCGTGDDYCGTGCKEGPCYGTSGSNDVSVADIVTPDFFNAIIDEADDSCAGKNFYSRDAFLDALNSYNQFGRLGSVDDSKREIAAAFAHFTHETGHFCYIEEIDGPSKDYCDESNTQYPCAPNKGYYGRGPIQLSWNFNYGPAGESNGFDGLNSPETVANDPVVSFKTALWYWMQNVRPVINQGFGATIRAINGQLECDGANPDTVRARVNYYTQYCSQLGVAPGDNQSC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0034 279 FunFam Endochitinase (Chitinase) 150 209 - -
Glsi04g0034 279 PIRSF Endochitinase 6 279 IPR016283 GO:0004568|GO:0005975
Glsi04g0034 279 SUPERFAMILY Lysozyme-like 77 279 IPR023346 -
Glsi04g0034 279 ProSitePatterns Chitin recognition or binding domain signature. 38 58 IPR018371 GO:0008061
Glsi04g0034 279 Pfam Chitin recognition protein 34 67 IPR001002 GO:0008061
Glsi04g0034 279 Gene3D - 29 78 IPR036861 GO:0008061
Glsi04g0034 279 SMART ChitinBD_3 35 67 IPR001002 GO:0008061
Glsi04g0034 279 SUPERFAMILY Plant lectins/antimicrobial peptides 34 69 IPR036861 GO:0008061
Glsi04g0034 279 ProSitePatterns Chitinases family 19 signature 1. 98 120 IPR000726 GO:0004568|GO:0006032|GO:0016998
Glsi04g0034 279 CDD chitinase_GH19 82 279 - -
Glsi04g0034 279 Gene3D Endochitinase, domain 2 150 207 - -
Glsi04g0034 279 Gene3D - 79 279 - -
Glsi04g0034 279 FunFam Endochitinase PR4 72 158 - -
Glsi04g0034 279 FunFam Class IV chitinase 30 79 - -
Glsi04g0034 279 ProSiteProfiles Chitin-binding type-1 domain profile. 33 69 IPR001002 GO:0008061
Glsi04g0034 279 CDD ChtBD1 42 62 - -
Glsi04g0034 279 ProSitePatterns Chitinases family 19 signature 2. 213 223 IPR000726 GO:0004568|GO:0006032|GO:0016998
Glsi04g0034 279 Pfam Chitinase class I 232 279 IPR000726 GO:0004568|GO:0006032|GO:0016998
Glsi04g0034 279 Pfam Chitinase class I 81 226 IPR000726 GO:0004568|GO:0006032|GO:0016998
Glsi04g0034 279 PANTHER CHITINASE-RELATED 14 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0034 Glsi-ChrGlsi04 391864 392789 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0034 7 279 Glycoside Hydrolase AT3G54420 69.597 2.54e-142 399
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0034 04 391864 392789 Glsi04g0034 04 391864 392789 ECH