LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3572	ATGGCCAAGGGACCTCCTTTATGCTTCTTCTCTCTTTCTCTTCTCATCGTCTGCTGTTCGGGAACTCTTGTGGGTTTTTCCTATCGTGAAAGAGGGGATGCTGCCACTTCGACGCGTGCTGGAACGATATCATTCCTTAAGCAAAACAAGGTTCCCCCATCTCAGATTCGAATTTTTGTCACGGATCATAGGATTTTGAGCAGTTTTACCAACTCCCACGAGTCAGTTGATTTCTACCTGAATGAAAGTCTAGTAAAAAATTTCATTAGGTCAAAACCATCTGCAGTTTCATGGTTAAAAGCTCATCTAGTAGACTTTCTTCCTCATGTAGGCATCCAAAGCATCATTGCTAGTTGTGGCAGTTTAGGCCAAAATGAGATACCTTTCCTTGTATCTGCTCTCAAATCAATTCATTCAGTTCTCAGCAAGCTTCATTTAGGCAGGGAAGTAAAGGTGTCACTAGCATTTCCACCGTCATTCTTAGAAAAGTTGAATGCATCACAAGAGAATGATCTTCGTAGGATTTTTTCATTTATAAAGGAAACAAATTCCTTTGCCATGATAGAAGACCACATTAATGGGGAATTAAGCATGGGGGATCACTTTGTTCAGTCTGTTATGAAGCGAGCCACAATTGCTGCTTCTATCTTTCCTTGTAAAGATGTTCCCGTGGTTCTGACAATCAAGAGCCCTGCTATTCCCAGTTCAATGGAAGTAGCTCAATTTAGTAAGAGGGTCTTAAAATATCTTGAAACAAGCACTCAGGTCACTGGTAGGATAATTGCATTATATTTAGAAGTTCATGGGACAGAGACTTTTGAGCAGGAAGAGCTCAAAAGGGAAGAGGAAGAGATCTTTCCTTCGTCCTGCAGAGAAATCCTAAGCAAATTCCACGTCAGAAGAACTCTAGAGGACACAACCAACCCTCCAACCACAGTTTTCCCCACAAATCCAGCTTCAACTACACCAGTCATTACACCCCCAGATACACCCACCATCATCACAGTTCCTTCTACCAATCCTGTCACGGTTTCACCCTCCAATCCAGCTGCAATGCCTGTAACAGTTCCTTCCACAACCCCAGTGCCCTTAGCCCCAACGAATCCTGCAAATCCGGGGACAACTCCGATAACCGTTCCAGGGGCACAACCAGCCACATCTTATCCACCCCCATCAGGAAGTGTTCCCGTGGTAAACCCGCTTCCACCTCCTACAAACACAAATGCCCCTGCCAGTTCGGGGCAAAGCTGGTGTGTGGCGAAGAATGGAGCTGCAGAGACTTCTCTTCAATCAGCACTGGACTATGCTTGTGGAATCGGTGGTGCAGACTGTTCACAAATCCAGCAGAGTGGGAGTTGCTACAATCCGAATACTCTTCAAAACCATGCTTCTTATGCCTTCAACAGCTACTACCAAAAAAATCCAGCACCAACTAGCTGTGACTTTGGAGGGGCTGCCACCCTGGTCAACGTGAATCCAAGCTCGGGTTCTTGCATTTATCCATCATCTTCCTCCTCTTCATCGTCAACCCCAACGCCGTCATCGCCAACAACGACATCAACTCCCACTCCACCATCATCAACGCCCACTCCACCATCATCATCAACTCCCACTCCACCATCATCATCAATTCCCACTCCACCATCATCATTAACTCCAACTCCAACATCAGGCGAATCTGGCTATGGTACCCCACCTACAGTGTTAAATTCAAGCAGCCCTGCATCAGGTACGGGTACCACGCCAGTTTTTGGGTCGGAAAGTCCTCCTAGTGTGAGTACCACGTCTTCTTCGCATTCAGCTGGTTTGCAACCTTTCCTTGGTTGCATGTCTCTGGTGATATCATTAGTCACTGGAAAACTTAGTATGCGCCCATAG	1878	0.4601	MAKGPPLCFFSLSLLIVCCSGTLVGFSYRERGDAATSTRAGTISFLKQNKVPPSQIRIFVTDHRILSSFTNSHESVDFYLNESLVKNFIRSKPSAVSWLKAHLVDFLPHVGIQSIIASCGSLGQNEIPFLVSALKSIHSVLSKLHLGREVKVSLAFPPSFLEKLNASQENDLRRIFSFIKETNSFAMIEDHINGELSMGDHFVQSVMKRATIAASIFPCKDVPVVLTIKSPAIPSSMEVAQFSKRVLKYLETSTQVTGRIIALYLEVHGTETFEQEELKREEEEIFPSSCREILSKFHVRRTLEDTTNPPTTVFPTNPASTTPVITPPDTPTIITVPSTNPVTVSPSNPAAMPVTVPSTTPVPLAPTNPANPGTTPITVPGAQPATSYPPPSGSVPVVNPLPPPTNTNAPASSGQSWCVAKNGAAETSLQSALDYACGIGGADCSQIQQSGSCYNPNTLQNHASYAFNSYYQKNPAPTSCDFGGAATLVNVNPSSGSCIYPSSSSSSSSTPTPSSPTTTSTPTPPSSTPTPPSSSTPTPPSSSIPTPPSSLTPTPTSGESGYGTPPTVLNSSSPASGTGTTPVFGSESPPSVSTTSSSHSAGLQPFLGCMSLVISLVTGKLSMRP	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3572	625	Pfam	X8 domain	417	487	IPR012946	-
	Glsi02g3572	625	MobiDBLite	consensus disorder prediction	380	414	-	-
	Glsi02g3572	625	MobiDBLite	consensus disorder prediction	499	603	-	-
	Glsi02g3572	625	Gene3D	-	411	513	-	-
	Glsi02g3572	625	MobiDBLite	consensus disorder prediction	517	552	-	-
	Glsi02g3572	625	PANTHER	BETA-1,3 GLUCANASE	375	514	IPR044788	-
	Glsi02g3572	625	Gene3D	Glycosidases	24	191	-	-
	Glsi02g3572	625	SMART	X8_cls	416	500	IPR012946	-
	Glsi02g3572	625	MobiDBLite	consensus disorder prediction	499	516	-	-
	Glsi02g3572	625	MobiDBLite	consensus disorder prediction	553	603	-	-
	Glsi02g3572	625	MobiDBLite	consensus disorder prediction	306	325	-	-
	Glsi02g3572	625	PRINTS	Proline rich extensin signature	315	331	-	-
	Glsi02g3572	625	PRINTS	Proline rich extensin signature	504	529	-	-
	Glsi02g3572	625	PRINTS	Proline rich extensin signature	337	349	-	-
	Glsi02g3572	625	PRINTS	Proline rich extensin signature	389	405	-	-
	Glsi02g3572	625	PRINTS	Proline rich extensin signature	364	385	-	-
	Glsi02g3572	625	MobiDBLite	consensus disorder prediction	306	320	-	-
	Glsi02g3572	625	FunFam	Glucan endo-1,3-beta-glucosidase 4	411	504	-	-
	Glsi02g3572	625	MobiDBLite	consensus disorder prediction	383	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3572	Glsi-ChrGlsi02	82700511	82702957	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3572	371	503	Glycoside Hydrolase	AT2G05790	46.269	7.31e-27	112

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi02g3572	02	82700511	82702957	Glsi11g0318	11	2078850	2081856	CCT
	Glsi02g3572	02	82700511	82702957	Glsi02g3572	02	82700511	82702957	ECH