Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3560 ATGGGGCACAAGCATTTGTGGGTGGCTTTCTGTTTATGGGCTTTAACATGCTCACTTCTTCCTTCTTTCTCTTCTGGGCTTCTGAGAATTGGTTTGAAGAAGAGGCGTCTAGATCTTCACAGCATTCGAGCTGCCAGAGCTGTAAGAGGAGAGTTGAAACCAGGCAGACCAGTGAAGGGTTCACATCATTATATTGGAAATTCAGATGATGAAAATATAGTACCTCTAAAGAATTATTTGGATGCACAATATTATGGAGAGATTGGAATTGGCACACCCCCAGACCTTCACTATTGCCTGCTATGTCCATTCTTGGTACAAGTCAAGCAAATCCCGTACATATACCGAGAATGGTACAATATGGTGGAGCAAGATCTTGTTAGTGAGAAGGTGTTCTCTTTTTGGCTCAATGCAGATCCGGAGGCAGAAGAGGGTGGCGAAATAGTATTTGGAGGTGTTGATCCAAATCACTTCAAAGGAAAACATACTTATGTTCCAATTACTAGAAAAGGTTACTGGCAGGTAATTTCATTAGTTCTCAACTGCATTTGCGAGGGTGGATGTGCTGCTATTGTGGATTCAGGAACATATTTGATTGCTGGTCCAACTTCAGTTGTGACTGAAATCAATCATGCCATCGGAGCTGAAGGAATCGTGAGTTCAGAATGTAAGGAAGTTGTTTCTCAATATGGAGACATGATTTGGGATCTCTTAGTTTCAGGGGTAGAGCCTGATGAAGTATGTTCGCAACTTGGTTTATGCGATGTGTATAGGGATCAATCTAAGAGATTAGAAAGTTCATTGTTTGGGATTGAGATGGTGACGGAGAAGGAACAGAGAGTGGGATTGTCAGCTAGGGATAATTCTTTGTGCAGCTTTTGTGAGATGACTGTATTTTGGATCCAGAATCAACTAAAACGAAAGGCAACCAAGGAAAAAGTAATCCACTACATAAACCAGCTGTGTGAGAGACTGCCAAGCCCAGGTGAAGAGACAATAAGTTGTGATAGTGTTTCTCATATGCCAAACATTATGCTTAGTATTGGAGATAAACCTTTTAACCTCACTCCAGAACAGTATATTTTGAAAACTGGAGAGGGCTCTGAAGCAGTTTGCCTTAGTGGGTTTACAGCTTTTGATATTCCCCCTCCACAGGGTCCCCTCTGGATTCTTGGTGATGTTTTTATGAGGGTATATCATACAGTCTTTGACTATGGCAATCTCCAAGTGGGTTTTGCTGAAGCTGCCTAA 1251 0.4181 MGHKHLWVAFCLWALTCSLLPSFSSGLLRIGLKKRRLDLHSIRAARAVRGELKPGRPVKGSHHYIGNSDDENIVPLKNYLDAQYYGEIGIGTPPDLHYCLLCPFLVQVKQIPYIYREWYNMVEQDLVSEKVFSFWLNADPEAEEGGEIVFGGVDPNHFKGKHTYVPITRKGYWQVISLVLNCICEGGCAAIVDSGTYLIAGPTSVVTEINHAIGAEGIVSSECKEVVSQYGDMIWDLLVSGVEPDEVCSQLGLCDVYRDQSKRLESSLFGIEMVTEKEQRVGLSARDNSLCSFCEMTVFWIQNQLKRKATKEKVIHYINQLCERLPSPGEETISCDSVSHMPNIMLSIGDKPFNLTPEQYILKTGEGSEAVCLSGFTAFDIPPPQGPLWILGDVFMRVYHTVFDYGNLQVGFAEAA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3560 416 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 18 95 IPR001461 GO:0004190|GO:0006508
Glsi02g3560 416 Gene3D Acid Proteases 108 152 IPR021109 -
Glsi02g3560 416 Gene3D Acid Proteases 28 101 IPR021109 -
Glsi02g3560 416 ProSiteProfiles Saposin B type domain profile. 287 328 IPR008139 -
Glsi02g3560 416 PRINTS Pepsin (A1) aspartic protease family signature 190 201 IPR001461 GO:0004190|GO:0006508
Glsi02g3560 416 PRINTS Pepsin (A1) aspartic protease family signature 389 404 IPR001461 GO:0004190|GO:0006508
Glsi02g3560 416 PRINTS Pepsin (A1) aspartic protease family signature 146 159 IPR001461 GO:0004190|GO:0006508
Glsi02g3560 416 SUPERFAMILY Saposin 219 326 IPR011001 -
Glsi02g3560 416 FunFam Lysosomal aspartic protease 105 216 - -
Glsi02g3560 416 ProSiteProfiles Peptidase family A1 domain profile. 1 413 IPR033121 -
Glsi02g3560 416 SUPERFAMILY Acid proteases 7 415 IPR021109 -
Glsi02g3560 416 SMART sapb_4 182 254 IPR008139 -
Glsi02g3560 416 Gene3D Acid Proteases 153 416 IPR021109 -
Glsi02g3560 416 Gene3D - 218 326 - -
Glsi02g3560 416 Pfam Saposin-like type B, region 1 290 326 IPR007856 GO:0006629
Glsi02g3560 416 Pfam Eukaryotic aspartyl protease 115 415 IPR033121 -
Glsi02g3560 416 Pfam Saposin-like type B, region 2 222 254 IPR008138 -
Glsi02g3560 416 ProSiteProfiles Saposin B type domain profile. 218 258 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3560 Glsi-ChrGlsi02 82565706 82568633 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3560 02 82565706 82568633 Glsi02g3560 02 82565706 82568633 ECH