Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3379 ATGAAGAGGCTAGTGGCTGTGCTATTACTTCTGGCATTAAGCTCCGCTCTAGAAAGTAATGGCGATGACAATGTTGAACCATGTAAATACAAAGCATTGGATCCCAGGCCTCACAGCGTGTCAATTTTGGAGTTTGGGGCAGTTGGAGATGGAAAAACATTAAATACGGTTGCATTTGAAAATGCAATTTTTTATGTTAAATCCTTTGCTGACAAAGGTGGCGCTCAGCTATATGTTCCATCAGGCAGATGGCTTACTGGAAGTTTCAACCTTACCAGCCACCTCACTCTTTTCCTGGAAAGAGGTGCTACTATTATTGGATCTCAGGACTGTGCACACTGGGGTGTACTTGATCCCCTCCCTTCTTATGGTCGAGGGATTGATGTACCAGGTGGGAGATATCGTAGCTTGATTTTTGGACAGAATTTAAGTGATGTGGTGATTACAGGTGATAATGGAACTATTGATGGCCAGGGTTCTGTTTGGTGGGAGTTGTTCAGCTCTCATTCCTTAAATTATAGCCGACCTCATCTTGTAGAAATTATTGGTTCTGATGATATCATAATCTCAAATGTGACATTTCTAAATTCTCCTGCTTGGGACATCCATTCAGTTTATTGCAGCAACGTTCTAATCCAAAACATTACTGCTCGAGCTCCAGCGGAATCCCCTTACACGAGTGGTATAGTGCCAGATTCTTCTGAGCATGTTTGCATTGACAACAGTAATATTAGCACCGGTCATGATGCAATTGTACTAAAGAGTGGTTGGGATCAGTATGGAATTACCTATGGCAGACCAACTTCGAGTGTCCACATTAGGGGTGTTCACCTACAATCATCATCAGGTGCTGGCCTGGCATTAGGAAGTGAGATGTCGGGTGGCATATCTAAATTAGTTGTGGAGCAACTTTATATACTCAACTCACTTGTGGGCGTTGAACTCAAGACAATCAAGGGTAGAGGTGGCTATATGAAAGACATCTTCATTTCAGATGTGGAATTTGAAAATGTTTACTTGGGTATCAGCTTGACAGGATACTGTGGTTCCCATCCAGATGACAAGTATAATCCAAATGCACTTCCAGTTGTTCATGGCATTACTTTTAAGAATGTCATTGGTACAAATATTACTATTGCTGGGAGTTTTTCAGGAATAGTTGACTCACCATTCACATCTATATGTCTTTCAAACGTGAATTTTTCCATCAGTTCTGAGTCATCATCTCCTTCATGGTTTTGTTCTAATGTAATGGGCTTCTCTGCGAATGTGTTTCCTGAGCCATGCCCTGATCTCCAGAGCACATATTCAAAGTCGTCTTCCTCTTGTTTTTCTTCCCCATATCCATCCTATAGTTATGTCTCAAGCTTATGA 1374 0.4156 MKRLVAVLLLLALSSALESNGDDNVEPCKYKALDPRPHSVSILEFGAVGDGKTLNTVAFENAIFYVKSFADKGGAQLYVPSGRWLTGSFNLTSHLTLFLERGATIIGSQDCAHWGVLDPLPSYGRGIDVPGGRYRSLIFGQNLSDVVITGDNGTIDGQGSVWWELFSSHSLNYSRPHLVEIIGSDDIIISNVTFLNSPAWDIHSVYCSNVLIQNITARAPAESPYTSGIVPDSSEHVCIDNSNISTGHDAIVLKSGWDQYGITYGRPTSSVHIRGVHLQSSSGAGLALGSEMSGGISKLVVEQLYILNSLVGVELKTIKGRGGYMKDIFISDVEFENVYLGISLTGYCGSHPDDKYNPNALPVVHGITFKNVIGTNITIAGSFSGIVDSPFTSICLSNVNFSISSESSSPSWFCSNVMGFSANVFPEPCPDLQSTYSKSSSSCFSSPYPSYSYVSSL 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3379 457 PANTHER PECTIN LYASE-RELATED 8 449 - -
Glsi02g3379 457 SMART pbh1 268 290 IPR006626 -
Glsi02g3379 457 SMART pbh1 359 381 IPR006626 -
Glsi02g3379 457 SMART pbh1 325 346 IPR006626 -
Glsi02g3379 457 SMART pbh1 184 204 IPR006626 -
Glsi02g3379 457 SMART pbh1 207 233 IPR006626 -
Glsi02g3379 457 SMART pbh1 234 255 IPR006626 -
Glsi02g3379 457 Gene3D - 23 421 IPR012334 -
Glsi02g3379 457 SUPERFAMILY Pectin lyase-like 31 434 IPR011050 -
Glsi02g3379 457 Pfam Glycosyl hydrolases family 28 135 418 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3379 Glsi-ChrGlsi02 81357745 81360898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3379 1 445 Glycoside Hydrolase AT3G16850 60.314 0.0 546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3379 02 81357745 81360898 Glsi02g3379 02 81357745 81360898 ECH