Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3374 ATGATGGAGTCCTGTGATTGCATTGACACACAATGGCCTCATGATGAACTTCTTATGAAATATCAGTACATCTCGGATGTCTTAATTGCCCTTGCATACTTCTCAATTCCTGTAGAACTGATATATTTTGTTCAAAAGTCTGCATTCTTCCCGTATAGATGGGTGCTTATGCAGTTCGGTGCTTTTATTATTCTTTGTGGAGCAACGCACTTCATAAACTTGTGGACATTGGCCATGCACTCTAAAGTCGTTGCTGTGGTAATGGCAGTTTCCAAAGTCTCATGTGCTATTGTGTCATGTGCCACTGCACTAATGCTTGTCCACATTATTCCTGATCTGCTAAGTGTCAAAACTCGTGAACTAATTCTTAAGAACAAGGCTGAAGAGCTTGACAGGGAAATGGGACTTATTCTTACTCAGGAAGAAACTGGAAGGCATGTTAGAATGCTGACTCATGAAATTAGAAGCACGCTTGATAGGCATACCATTCTGAAGACTACTCTTGTTGAACTGCAAAGGACTTTGGGCTTGGAGGAATGTGCATTATGGATGCCATCAAGAAGTGGTCTAAATCTGCAACTTTCCCATACTCTAAGCTGCCATGTACAAGTTGGCTCTGCTATGCCAACAAATCTTCCTATTATCAATGAAGTTTTCAATAGCTCTCAAGCAATACGAATACCACACTCCTGTCCACTGGCCAGAATCAGACCTCATGTGGGGGGAAGATACATACCACCTGAAGTTGTTGCTGTCCGGGTGCCACTTTTGCATCTCTCAAATTTCCAAATTAATGATTGGCCCGATCTTTCTGCAAAAAGCTATGCAATCATGGTGCTGATTCTCCCTACTGATGGTGCTAGAAAATGGCATGATCATGAGTTGGAACTTGTTGATGTTGTCGCAGATCAGGTAGCAGTAGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCTAGCCCGTGATCAATTAATGGAGCAGAATGTTGCTTTAGATTTAGCTCGACAAGAGGCAGAGATGGCCATCCATGCTCGCAATGATTTCCTTGCTGTTATGAATCATGAAATGCGGACACCAATGCATGCAATTATAGCATTGTCATCGCTTCTCTTGGAGACTGAACTGACTCCAGAGCAGAGGGTTATGATAGAGACAACATTGAAGTGTAGCAATGTGTTGGCAACACTTGTTAATGATGTTCTAGATCTTTCTAAATTGGAGGATGGTAGCCTTGAATTAGAATTGGGGAAATTTAACCTTCTCGGGGTTCTGGGAGAGGTCATTAATCTGATAAAGCCTATAGCATCTGTGAAGAAGTTACCTGTGACTTTAATTCTGGCCCCCGATCTGCCTGAGTTTGCCATTGGAGATGAGAAACGGTTTTTGCAGATTCTTTTAAATATTGTGGGTAATGCTGTCAAATTCACAAAGGAGGGCCATGTTTATGTCAGAGCATCTGTTGCAAAACCAGAACTTTTACAGGATCGGCAATCTCCTGAGTTTTATCCAGCATCAAGCGATGCTCATCGCTACATACGAGTACAGGTTAAGGATTCTGGATGTGGCATTCTTCCACAAGGTATTCCACATCTTTTTACCAAATTTGTTGAGTCTCCAAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGGCTTGGGCTTGCCATTTGTAAAAGATTTATAAATCTCATGGGAGGTAACATATGGATTGAGAGTGAGGGCAGTGATAAAGGAACCACTGTTACATTCATAGTCAAACTTGGGATTTGTGGCAATCCAGCTTCATCAGGGCACCAAGCTGCAAACAGAGGCAAAGCATATGGTGGAAGTGGACACCTCACTAGCTATAAACCCTTTGGCAAAGACAATGATGAGCTAGGTTTTCCTAATCGACGCTATCAAAGAAGTCTTTAA 1914 0.4253 MMESCDCIDTQWPHDELLMKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIILCGATHFINLWTLAMHSKVVAVVMAVSKVSCAIVSCATALMLVHIIPDLLSVKTRELILKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELQRTLGLEECALWMPSRSGLNLQLSHTLSCHVQVGSAMPTNLPIINEVFNSSQAIRIPHSCPLARIRPHVGGRYIPPEVVAVRVPLLHLSNFQINDWPDLSAKSYAIMVLILPTDGARKWHDHELELVDVVADQVAVALSHAAILEESMLARDQLMEQNVALDLARQEAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETTLKCSNVLATLVNDVLDLSKLEDGSLELELGKFNLLGVLGEVINLIKPIASVKKLPVTLILAPDLPEFAIGDEKRFLQILLNIVGNAVKFTKEGHVYVRASVAKPELLQDRQSPEFYPASSDAHRYIRVQVKDSGCGILPQGIPHLFTKFVESPSGPARPSSGAGLGLAICKRFINLMGGNIWIESEGSDKGTTVTFIVKLGICGNPASSGHQAANRGKAYGGSGHLTSYKPFGKDNDELGFPNRRYQRSL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3374 637 Gene3D - 139 310 IPR029016 -
Glsi02g3374 637 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 331 411 IPR036097 GO:0000155|GO:0007165
Glsi02g3374 637 FunFam Ethylene receptor 1 410 592 - -
Glsi02g3374 637 CDD HATPase_EvgS-ArcB-TorS-like 462 587 - -
Glsi02g3374 637 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 457 587 IPR003594 -
Glsi02g3374 637 SMART HKATPase_4 457 589 IPR003594 -
Glsi02g3374 637 CDD HisKA 343 406 IPR003661 GO:0000155|GO:0007165
Glsi02g3374 637 Pfam GAF domain 159 309 IPR003018 GO:0005515
Glsi02g3374 637 Gene3D - 410 591 IPR036890 -
Glsi02g3374 637 FunFam Ethylene response sensor 137 310 - -
Glsi02g3374 637 ProSiteProfiles Histidine kinase domain profile. 352 589 IPR005467 -
Glsi02g3374 637 SUPERFAMILY GAF domain-like 162 312 - -
Glsi02g3374 637 FunFam Ethylene receptor 1 312 408 - -
Glsi02g3374 637 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 399 587 IPR036890 -
Glsi02g3374 637 Gene3D - 311 409 - -
Glsi02g3374 637 SMART HisKA_10 345 410 IPR003661 GO:0000155|GO:0007165
Glsi02g3374 637 Pfam His Kinase A (phospho-acceptor) domain 346 410 IPR003661 GO:0000155|GO:0007165
Glsi02g3374 637 PRINTS Bacterial sensor protein C-terminal signature 513 527 IPR004358 GO:0016310|GO:0016772
Glsi02g3374 637 PRINTS Bacterial sensor protein C-terminal signature 548 566 IPR004358 GO:0016310|GO:0016772
Glsi02g3374 637 PRINTS Bacterial sensor protein C-terminal signature 531 541 IPR004358 GO:0016310|GO:0016772
Glsi02g3374 637 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 3 601 - -
Glsi02g3374 637 SMART gaf_1 159 319 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3374 Glsi-ChrGlsi02 81340543 81343390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3374 2 601 Miscellaneous Gene Families AT2G40940 76.167 0.0 910
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3374 02 81340543 81343390 Glsi02g3374 02 81340543 81343390 ECH