Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3343 ATGGCCTCGGAATTGATTTTCAGAGGGCACGAGACCCATCCCGTCCACGAGGCCTACTCCCCGAAGCCACACAAGCCATGGCTTTCTGTGACTCGGCCAATTCGCTACTTGCTCCGCGAACAACGGCTCGTTTTCGTACTAGTCGGCATTGCGATTGCCACCTTGTTCTTCACCCTCCTGCCTTCCTCTTCCTCACGCAAAGCACGCGAATACGACACGGTTCCCATCCCTTACTTCGAACATGAGTCCACCCAATGGTTCCATAAGCCCAGGAACGACCGCTCTGCCTCGTACAGCATGCCGGTGCATTCCGTTGGGAAAGTCCCCTTGGGGATTAAGAGAAAGGGGCTCCGGATCGTGGTGACGGGCGGGGCTGGTTTCGTCGGGTCGCACCTGGTGGATCGTCTGATAGCTAGAGGTGACAGCGTGATCGTCGTGGATAATTTCTTCACCGGAAGGAAAGAGAACGTGATGCACCACTTTGGGAACCCCAGATTCGAGCTCATCCGGCATGACGTCGTTGAGCCTCTATTATTGGAGGTGGATCAGATCTATCATCTTGCATGCCCTGCATCCCCGGTCCATTACAAGTTCAACCCAGTCAAGACTATCATATCCTTTTTCCACGTGGTGTCCAATTGTAAAATTTTAAGTGTCCTTAATTGGGGTTGTGTTCACAAGACCAACGTGGTGGGGACTTTGAACATGCTGGGACTGGCTAAAAGAGTCGGCGCAAGGTTCTTGCTAACGAGTACCAGTGAGGTTTATGGCGATCCTCTGCAACACCCTCAGAAGGAGACCTACTGGGGCAACGTCAATCCCATTGGTGTCCGAAGTTGCTACGATGAGGGAAAGCGTACGGCTGAGACGTTGACAATGGATTACCACAGAGGAGCAGGCGTGGAGGTTAGAATTGCTAGAATCTTTAACACCTACGGGCCCCGAATGTGCTTAGACGATGGCCGTGTTGTCAGCAACTTCGTTGCCCAGGCACTAAGAAAGGAGCCTTTGACTGTTTATGGGGACGGAAAGCAGACAAGGAGTTTCCAGTATGTTTCTGATTTGGTGGAGGGTCTGATGCGCCTTATGGAGGGAGAGCACGTGGGACCTTTCAATCTCGGAAATCCCGGTGAATTCACTATGCTTGAACTTGCCAAGGTGGTCCAAGAAACAATCGATCCAGATGCTAAGATAGAGTACAGGGCCAACACAGAAGATGACCCACACAAGAGAAAGCCTGACATTTCAAGGGCTAAGGAGCTACTAGGCTGGGAACCCAAGGTGAACCTGCGCAAGGGACTCCCCCTCATGGTTTCTGACTTCCGACAACGTATTTTTGGCGACCACAAGGAAGGTGCAACCTCCACCTAA 1371 0.5208 MASELIFRGHETHPVHEAYSPKPHKPWLSVTRPIRYLLREQRLVFVLVGIAIATLFFTLLPSSSSRKAREYDTVPIPYFEHESTQWFHKPRNDRSASYSMPVHSVGKVPLGIKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIISFFHVVSNCKILSVLNWGCVHKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPDAKIEYRANTEDDPHKRKPDISRAKELLGWEPKVNLRKGLPLMVSDFRQRIFGDHKEGATST 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3343 456 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 22 449 IPR044516 GO:0042732|GO:0048040|GO:0070403
Glsi02g3343 456 FunFam UDP-glucuronic acid decarboxylase 2 113 260 - -
Glsi02g3343 456 Pfam GDP-mannose 4,6 dehydratase 121 203 IPR016040 -
Glsi02g3343 456 Pfam GDP-mannose 4,6 dehydratase 226 435 IPR016040 -
Glsi02g3343 456 CDD UGD_SDR_e 118 442 - -
Glsi02g3343 456 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 115 446 IPR036291 -
Glsi02g3343 456 Gene3D - 113 260 - -
Glsi02g3343 456 Gene3D - 261 446 - -
Glsi02g3343 456 FunFam UDP-glucuronic acid decarboxylase 1 261 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3343 Glsi-ChrGlsi02 81182900 81186102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3343 114 434 Miscellaneous Gene Families AT4G00110 23.932 9.54e-16 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3343 02 81182900 81186102 Glsi02g3343 02 81182900 81186102 ECH