Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3325 ATGGCTGTGGTTGCAGTCGCTCTGCACTGCCACTTGCTCTGCTTCTCGAAATGGAAGACGACGACTGCTACGACACCGCACACACACAGAGCAATTCTTTTACATTCACAAAAGAAGCCTCAATTTTCATTCATTTCCTGCTCTTCTTCGTCGTCTTCTAGTTCCCAGACCCCAGAAGCTGATACTGAAACAGCAGAATATTGCGTCAATCTCGGTCTTCAACTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCAGTTTGAAACAGCTCTTTCTTTGGATCCCAATCCTATGGAGGCCCAAGCCGCACTCTATAACAAAGCTTGCTGCCATGCATACAGAGGGGAAGGAAAGAAAGCTGCTGATTGTCTCCGAACTGCTCTGAGGGAATACAACCTAAAATTCGGTACCATTCTCAATGATCCAGACTTGGCCTCTTTCAGAGCTTTGCCTGAATTTAAAGAACTACAAGAAGAGGCCAGGCTTGGTGGTGAAGATATTGGCTATGGTTTTCGAAGAGATCTAAAACTCATCAGCGAAGTTCAAGCTCCATTTCGTGGGGTTAGGAGATTCTTCTATATAGCACTGACTGCAGCTGCAGGAATTTCAACGTTCTTTACTGTGCCCAGGCTATTTCGTGCAATTCAAGGTGGTGATGATGCTCCTGATCTATGGGAAACTGCTGGGAATGCCGCCATTAACATCGGAGGTATCATTATTCTTGTGGCATTATTCTTCTGGGACAATAAAAAAGAGGAGGAACAAATTGCACAGATATCCCGAGATGAGACACTCTCAAGGTTGCCTCTGCGCCTTTCAACTAATCGCATAGTTGAACTTGTGCAGCTACGGGACACGGTCAGGCCAGTTATATTAGCAGGGAAAAGAGAAACGGTATCTTTGGCTTTGGACAGGGCTGAGAGGTTTCGTACTGAACTCCTTAGACGTGGTGTTCTGTTAGTTCCTGTCATATGGGGAGAAGGTAGGGAAACAAAAATTGAGAAGAAAGGTTTTGGTCTTCCTGCAAAAGCTGCTGCAGCTCTTCCATCCATTGGGGAAGATTTTGATAAACGAACACAGTCCATAACTGCAAAATCGAAGTTGAAAGCTGAAATTAGGTTCAAGACTGAGGTTATATCACCGGCAGAATGGGAAAGGTGGATAAAGGATCAGCAGAAGTCTGAAGGAGTTACTCCTGGTGAAGACGTCTACATTATACTGCGCTTAGATGGGCGGGTTCGAAGATCTGGGAAAGGTATGCCTGACTGGGAGCAAATTGTCAAGGAGCTACCACCAATGGAAGCATTTCTGAGCAAGCTAGAAAGATGA 1332 0.4535 MAVVAVALHCHLLCFSKWKTTTATTPHTHRAILLHSQKKPQFSFISCSSSSSSSSQTPEADTETAEYCVNLGLQLFSKGRVKDALTQFETALSLDPNPMEAQAALYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYIALTAAAGISTFFTVPRLFRAIQGGDDAPDLWETAGNAAINIGGIIILVALFFWDNKKEEEQIAQISRDETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKRETVSLALDRAERFRTELLRRGVLLVPVIWGEGRETKIEKKGFGLPAKAAAALPSIGEDFDKRTQSITAKSKLKAEIRFKTEVISPAEWERWIKDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPDWEQIVKELPPMEAFLSKLER 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3325 443 Gene3D Tetratricopeptide repeat domain 50 149 IPR011990 GO:0005515
Glsi02g3325 443 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 47 441 - -
Glsi02g3325 443 SMART tpr_5 102 135 IPR019734 GO:0005515
Glsi02g3325 443 SMART tpr_5 65 98 IPR019734 GO:0005515
Glsi02g3325 443 SUPERFAMILY TPR-like 59 131 IPR011990 GO:0005515
Glsi02g3325 443 ProSiteProfiles TPR repeat profile. 65 98 IPR019734 GO:0005515
Glsi02g3325 443 Pfam Low psii accumulation1 / Rep27 173 250 IPR021883 -
Glsi02g3325 443 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 52 158 - -
Glsi02g3325 443 Pfam Tetratricopeptide repeat 65 97 IPR013105 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3325 02 81083006 81088238 Glsi02g3325 02 81083006 81088238 ECH