Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3262 ATGAGTTCGGCAGGAACAACCAAAGGTGGTAGGGGCAAGCCCAAATCTTCCAAATCCGTTTCTAGGTCTCAGAAGGCTGGTCTTCAATTCCCTGTTGGCCGTATCGCCCGCTTTCTCAAAGCCGGCAAGTATGCCGAACGCGTCGGCGCCGGTGCTCCCGTTTATCTCTCTGCTGTGTTGGAATATCTTGCTGCTGAGGTTCTTGAGCTTGCTGGCAATGCTGCTAGAGATAACAAGAAGAATCGCATTGTTCCAAGGCATATTCAGCTTGCTGTTCGTAACGATGAGGAGTTGAGCAAGCTCTTAGGAACTGTCACAATTGCCAATGGTGGTGTTTTGCCAAATATTCATCAAACTCTACTGCCAAAGAAGGTGGGGAAGGGAAAAGGCGACATTGGGTCGGCATCCCAAGAATTCTAG 420 0.4952 MSSAGTTKGGRGKPKSSKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQTLLPKKVGKGKGDIGSASQEF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3262 139 Pfam Core histone H2A/H2B/H3/H4 12 93 IPR007125 GO:0003677
Glsi02g3262 139 CDD H2A 12 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Glsi02g3262 139 Gene3D Histone, subunit A 1 131 IPR009072 GO:0046982
Glsi02g3262 139 PRINTS Histone H2A signature 47 62 IPR002119 GO:0000786|GO:0003677|GO:0030527
Glsi02g3262 139 PRINTS Histone H2A signature 62 75 IPR002119 GO:0000786|GO:0003677|GO:0030527
Glsi02g3262 139 PRINTS Histone H2A signature 18 40 IPR002119 GO:0000786|GO:0003677|GO:0030527
Glsi02g3262 139 PRINTS Histone H2A signature 76 90 IPR002119 GO:0000786|GO:0003677|GO:0030527
Glsi02g3262 139 PRINTS Histone H2A signature 104 122 IPR002119 GO:0000786|GO:0003677|GO:0030527
Glsi02g3262 139 SMART h2a4 7 127 IPR002119 GO:0000786|GO:0003677|GO:0030527
Glsi02g3262 139 FunFam Histone H2A 8 131 - -
Glsi02g3262 139 ProSitePatterns Histone H2A signature. 26 32 IPR032458 -
Glsi02g3262 139 MobiDBLite consensus disorder prediction 1 25 - -
Glsi02g3262 139 Pfam C-terminus of histone H2A 96 129 IPR032454 -
Glsi02g3262 139 SUPERFAMILY Histone-fold 10 128 IPR009072 GO:0046982
Glsi02g3262 139 PANTHER HISTONE H2A 11 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3262 Glsi-ChrGlsi02 80664967 80666115 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3262 02 80664967 80666115 Glsi02g3262 02 80664967 80666115 ECH