Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3256 ATGAAGCGAGTGTGGAAACTATCCGACGCAGCACAAGCAGAGTTGTTCTGCTTTCATGGAATATCTGCAAAACCAAAACCCCTTAGTTCCTTTTCGATTTTCCTGGAAAGTTCCACAAATTACAGATGCACCCGCCAAGTCAATGCCCACATTCAATCCTCCGAACCTTCCGCGTTCCGAAATATGATTGGATTGTTCTCATGCACCCCCAATAACTTTCATCTATTTTCCAGAGAGGATATGAGTAGGAAAGTCACGATTTTGAGGGACGAATTGCTTCGGGAAGCCCAGGACTATGATAGGGTTCTCATGATTTTGGAGGAGAACTCTGATCCTTTGCTTTGGAGTTATCCCGATGGGTCCGCGGTTGTTGAGCTGTTGGATCAGTTGGATTCATGGCCTCACTTGGCTCTAATGGTGTTAAATTGGAGAAGAAAAAGCTCTCATGGTGGCACCCCCATGGCTCCCTTAGAGTACTCTAAGGGTATCAAAGTTGCTGGGAGATCAAGAGATATGGATCTTGCAGTGGAACTCTTTGAAGAGGCTGCAAACAAACTGGTCAACACAACATCTACTTATAATGCACTGATGAGTGCTTTTATGTTCAATGGTCTTGCAGATAAATGCCAATCATTATTTCAGCAAATGAAGAGTGATGCAACTTGTAGCCCTAACATTGTAACATACAATATTCTTATTTCTGTTTTTGGTCGCTTGATGCTAATAAATCACATGGAAGCAACATTGGAGGAGATACATAATTTAAACCTCTTCCCTAATTTAAGCACTTACAATAATTTAATTGCTGCATATGTTACGGCTTGGAAGTGGGATAGAATGGAACAAACTTTTCAAATGCTGAAGTCAAGCCCTGTTAAACCTGATATCAAAACCTACTTGCTAATGCTTCGTGGGTATGCTCATTCTGGTAATCTGGAGAAGATGGAAGAGACATATCAGGTAGTAAGGGATCGTGTAAATGAGAATGAAATTCCATTGATCAGGGCCATGATATGTGCATATTGTAAAAGTTCTGCTGCTGATAGACTTAAGAAGATAGAGGAATTACTGAAGTTGATTCCAGAAAAGGAGTACAGGCCATGGTTAAATGTGTTGTTAATTAGGCTGTATGCCCAAGAGGACTGGTTAGAGGAAATGGAGAATTCAATTAATGATGCGTTTGAGCACAAAGTCTCTGTAACAACAGTAAGTATAATACGATGCATCATTTCAACTTATTTTCGGTGCAACTTAGTAGACAGGCTAGCAAGTTTTGTGAGGCGTGCTGAATGTGCCGAGTGGAAAATTTGCCGCTCCCTATACCATTGTAAGATGGTCATGTATGCATCACAAAAGCGCCTAGAAGAAATGGAAAGTGTCCTGAATGAGATGGAAAGTGTCAACTTGGATTCAACCAAGAGAACATTGTTGATAATGTACAAGGCTTACTTGAGCAGTGGTCAAAGATACAAGGTTGAGAAAATAGTGGGATTAATGTGCAAGCGTGGGTATGAATTTCCGATGGAGGCATTCCCATCATAA 1542 0.4099 MKRVWKLSDAAQAELFCFHGISAKPKPLSSFSIFLESSTNYRCTRQVNAHIQSSEPSAFRNMIGLFSCTPNNFHLFSREDMSRKVTILRDELLREAQDYDRVLMILEENSDPLLWSYPDGSAVVELLDQLDSWPHLALMVLNWRRKSSHGGTPMAPLEYSKGIKVAGRSRDMDLAVELFEEAANKLVNTTSTYNALMSAFMFNGLADKCQSLFQQMKSDATCSPNIVTYNILISVFGRLMLINHMEATLEEIHNLNLFPNLSTYNNLIAAYVTAWKWDRMEQTFQMLKSSPVKPDIKTYLLMLRGYAHSGNLEKMEETYQVVRDRVNENEIPLIRAMICAYCKSSAADRLKKIEELLKLIPEKEYRPWLNVLLIRLYAQEDWLEEMENSINDAFEHKVSVTTVSIIRCIISTYFRCNLVDRLASFVRRAECAEWKICRSLYHCKMVMYASQKRLEEMESVLNEMESVNLDSTKRTLLIMYKAYLSSGQRYKVEKIVGLMCKRGYEFPMEAFPS 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3256 513 Pfam PPR repeat 447 466 IPR002885 -
Glsi02g3256 513 Coils Coil 89 109 - -
Glsi02g3256 513 Gene3D Tetratricopeptide repeat domain 90 253 IPR011990 GO:0005515
Glsi02g3256 513 Gene3D Tetratricopeptide repeat domain 254 325 IPR011990 GO:0005515
Glsi02g3256 513 Gene3D Tetratricopeptide repeat domain 382 510 IPR011990 GO:0005515
Glsi02g3256 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Glsi02g3256 513 PANTHER EXPRESSED PROTEIN 36 512 IPR044179 GO:0003729
Glsi02g3256 513 Pfam PPR repeat family 259 307 IPR002885 -
Glsi02g3256 513 Pfam PPR repeat family 190 236 IPR002885 -
Glsi02g3256 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3256 165 367 Miscellaneous Gene Families AT4G11690 29.817 1.03e-14 74.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3256 02 80639026 80641585 Glsi02g3256 02 80639026 80641585 ECH