Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3154 ATGGAAGAGGGGGAAGCGAGCAAAGATGTTGAAGTGGCTCCGGCGCTAATTGCGGTTCACCCCGACCAAAAATCTGTTGCCGTTGCCGTTGGACCGTACCTGCGCTTGTTCGATTTTCATGCTGGTTCTGCAGCTTCTTTGATTGATGACTCTGGCGGGTCATTTCATACAGATTCTATTAGAGCTATTCGGTTTGGCGCAAAAGGGAACCTCTTTGTATCTGCAGGTGATGATAAAACTGTCAAGATATGGTCAACTGAATTTTGGCGGTGCTTCTGTACTGTGTCTTCAGAAAAGAGAGTCAGTGCAGTCGCTATAAGCAATGATGGTTCTTATGTGTGTTTCGCTGACAAATTCGGTGTTGTCTGGGTTGTGGATCTGACTGGATATGATGGCAATCAACCATTACTTGATGAAAAAGCAACACCACTTCTTTCTCACTATTGTAGTATCATCACTAATTTGGAATTTTCCCCAGATGGTCGGTTCATTGTTAGTGCTGATCGGGATTTTAAAATCCGTGTCACTGTTTTTCCCAACAAGCCCTTAAATGGAGCTCACGAGATACAAAGTTTCTGTCTTGGTCATACACAGTTCGTTTCCTGCTTTGCCTTTGTTCATGCTCAGGAATCCCCTCAAAGCCTTCTCATCTCTGGAAGTGGTGATTCAACAGTCCGTTTGTGGGATACCTCCTCTGGAGCACTCCTAGATACCTGTGAGGTTGCAGTTAAGGCAGGACTTTTAGAGTCAAATGGTAATGCAGAGGAGCATGACCATGCTGTGACTGATTTATGCACCACCCTTGATGGGTTGCTTGTTGCAGTGGCCCTTCAGAGCTTGCAAGGAATAGTATTGCTGAGGTGCAACATTTCTGCACAATCACTTTCTGTTGCCAAGGTAATTTCTATTGCAGGAGAGGCCTTTGTCCCTACCAGCCTGGGGAGCAGCTCCTCTGCTGGGATATTGTGGATGGTAACAGGTGTCTCTAGTTTGCCCGGCTTTAGTTATCCCACATTGGCTCGTGTTAGAGTAATTTCTGGTTTTGATGCTGAGCAAGAGCCAGCCGTTATGGAAGATGACAAGATACCTGGGGGCGAGAAACTGCTAGAAACGTTGCAGGGAAGCACATCTGTTGATAAGAATGCATTCTTGGCGGCTGCTGAAGCTGTCAAAACAGCAATGTGCAATCTGTTAATTAAAAAGCAGTACCCTTCAGAGAATAGAGAATTTAGGAAGAGAACCAGAAACGATAGAAAACCTCAAAAGTAG 1269 0.4531 MEEGEASKDVEVAPALIAVHPDQKSVAVAVGPYLRLFDFHAGSAASLIDDSGGSFHTDSIRAIRFGAKGNLFVSAGDDKTVKIWSTEFWRCFCTVSSEKRVSAVAISNDGSYVCFADKFGVVWVVDLTGYDGNQPLLDEKATPLLSHYCSIITNLEFSPDGRFIVSADRDFKIRVTVFPNKPLNGAHEIQSFCLGHTQFVSCFAFVHAQESPQSLLISGSGDSTVRLWDTSSGALLDTCEVAVKAGLLESNGNAEEHDHAVTDLCTTLDGLLVAVALQSLQGIVLLRCNISAQSLSVAKVISIAGEAFVPTSLGSSSSAGILWMVTGVSSLPGFSYPTLARVRVISGFDAEQEPAVMEDDKIPGGEKLLETLQGSTSVDKNAFLAAAEAVKTAMCNLLIKKQYPSENREFRKRTRNDRKPQK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3154 422 ProSitePatterns Trp-Asp (WD) repeats signature. 216 230 IPR019775 -
Glsi02g3154 422 Gene3D - 15 97 IPR015943 GO:0005515
Glsi02g3154 422 SMART WD40_4 142 177 IPR001680 GO:0005515
Glsi02g3154 422 SMART WD40_4 40 85 IPR001680 GO:0005515
Glsi02g3154 422 SMART WD40_4 88 126 IPR001680 GO:0005515
Glsi02g3154 422 SMART WD40_4 185 229 IPR001680 GO:0005515
Glsi02g3154 422 SUPERFAMILY WD40 repeat-like 17 275 IPR036322 GO:0005515
Glsi02g3154 422 Pfam WD domain, G-beta repeat 55 85 IPR001680 GO:0005515
Glsi02g3154 422 Pfam WD domain, G-beta repeat 146 175 IPR001680 GO:0005515
Glsi02g3154 422 Pfam WD domain, G-beta repeat 193 229 IPR001680 GO:0005515
Glsi02g3154 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 233 - -
Glsi02g3154 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 238 IPR001680 GO:0005515
Glsi02g3154 422 PANTHER WD40 REPEAT PROTEIN 4 13 416 IPR028884 GO:0036265
Glsi02g3154 422 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 23 414 IPR028884 GO:0036265
Glsi02g3154 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 87 IPR001680 GO:0005515
Glsi02g3154 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 87 - -
Glsi02g3154 422 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 99 356 - -
Glsi02g3154 422 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 13 98 - -
Glsi02g3154 422 Gene3D - 98 287 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3154 Glsi-ChrGlsi02 79992551 79995781 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3154 02 79992551 79995781 Glsi02g3154 02 79992551 79995781 ECH