Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3149 ATGGTTGCTAATCGCAAGTACGGCATAGCCCGAGTTTCCCCCAACAGAAGTCACTGGTCTATTGTTAAGTTTGCTAGCCCTTCTTCAGCCAACACAAGTTCACGAGCATTTCTACTGGGATTACAAAATGAGTTCATCCCCCAACCCCAAGTACTATATTTCTCTAGTATGGCTGAAACAATCCTGGTCCAGGCTCGAGACCCAGCAAAACTGAGCATGGAAATACAAAATGCTATTGAGGGGAATCAATTAGATGATGCATGGAGGTTATTTGAGCAGCATATGCAAATGGAGGGGTTTCCTAGGAAATCTGTTCTCAACAAGCTTCTAACAACTTTTGTGGAAAGCCTTGATGTGCAATGGCTAGAAAAAGCTTATGCATTGGTAGAACAAGCTTTTGAGGAAGGTAAACAGAACTTGTTAGAGAAGGAAGTACTTATATATCTCTGCTTCGGTCTTGCTAAAACTGGACTACCAGTTCCTGCGTCAACTGTTTTAAGAAAGATGATAGATATGGAGCAATATCCCCCTGTCACTGCTTGGTCTGCAGTTTTGGCCCACATGTCACAAACAGCGGATGGAGCTTACCTTGCTGCTGAGTTGATTCTTGAGATAAGTTATTTGTTCCAAAACAATAGAGTGGATCCACGTAAAAAGAGCAATGCACCTTTGATAGCTATGAAGCCCAATACTACTGCTTTTAACATTGCTTTGGCCGGGTGTCTCTTATTTGAGACAACTAGGAAAGCAGAGCAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAACTGATGCAAACTTACTGATAATAATGGCACATGTATATGAGAGAAATGGACGAATACAAGAGCTTAAGAAGCTAAGAAGGCATATAGAGGAAGCACCAAACCTTACTGATATTCAGTTCCGACAATTCTATAATTGTTTGTTCACATGCCATTTGAAATTTGGGGATCTAGATTCCACATCAAACATGGTTTTGGAAATGCTGAGGAAAGCAAAGGAAGCAAAAAATTCTCTTGCAGCAGCTAAATTTATGATCGACGCAACTGAAATTGGCCATAACTATTCTGCTGGACTGGCTTCTGTGCAAAGTTTGAGCAACAGTAAAGATTCAGATAGCTTAAAATATAACAAACCAATAAGAAACACTGTTCTATCTTATGAGGAGTTCTCTAGCGATCGGAATTTCTTGAAACTTGAAGCAGAGTCAAAGGCTCTTCTTGGTTCTTTGTTAGCCAAGTTGCAGATGCAGGTTGTCTTGATTACTACTGAGCACGGTATACTTCAACCAACGGAGTCTATCTATTTGAAACTGGTTAAAGCTTTTCTAGAACTTGGCAAGACCAAGGATTTGGCAGAGTTTCTAATCAAGGCAGAAAGAGAAGATTCCCCGCTTTCCAATGACAGTTCAATCTTGGTTCATGTCATTAATTCATGCATTTCACTTGGATGGTTGGACCAAGCACATGACCTTCTTGATGAGATGCGATTAGCTGGAATTAAAACTGGTTCATCTGTATATGCCTCTCTTTTGAAAGCATATTGTCAAGCAAATAGGGCTGCGGATGTTACTTCACTTATTAGAGATGCAAGAAAGGCTGGCATCCAGCTGGACTCAAGCTCTTATGAAGCAATGATCCAATCTAGGGTGCTTCAGGAGGATACACAGGGAGCACTCCATTTATTCAGAGAGATGAAAGAGGCTAAAATTCCAAAAGTTGGCCAACAAGACTCTGTCATGCTGACTAAAAGTTGTTCAGTGAAAGATGAATCTGGGTTGATGGCGAAGCTATTGCAGGAAATCAAGGATGGACAGAAAGTGGATTGTGGAGTTCATGACTGGAATAACGTAATCCATTTTTTCTGTAAGAAGAGACTGATGAAAGATGCTGAAAAGGCTCTGAAGAATATGAGGAGCCTAGGCCACGCACCAAATGCACAAACTTTCCATTCTATGGTCACTGGGTATGCGGCTATTGGAGGGAACTATCTGGAGGTAACAGAGCTTTGGGGTGAGATGAAAGCTCTTGCTTCTTCGATCTCAATGAAGTTTGATCAGGAACTTCTCGATTCAGTGCTGTATACATTTGTGAGAGGTGGATTCTTCAATCGAGCCAACGAAGTCGTGGTGATGATGGAAAAAGCCAACATGTTCATTGACAAGTACAAGTACCGAATGCTCTTCTTGAAGTACCATAAAACACTTTACAAAGGCAAGGCTCCAAAATTTCAGACAGAAGCCCAATTAAACAAGAGGGAAGCAGCCTTGGCCTTTAAAAGATGGGTAGGCTTGAGTTGA 2304 0.4132 MVANRKYGIARVSPNRSHWSIVKFASPSSANTSSRAFLLGLQNEFIPQPQVLYFSSMAETILVQARDPAKLSMEIQNAIEGNQLDDAWRLFEQHMQMEGFPRKSVLNKLLTTFVESLDVQWLEKAYALVEQAFEEGKQNLLEKEVLIYLCFGLAKTGLPVPASTVLRKMIDMEQYPPVTAWSAVLAHMSQTADGAYLAAELILEISYLFQNNRVDPRKKSNAPLIAMKPNTTAFNIALAGCLLFETTRKAEQLLDMMPRIGVKTDANLLIIMAHVYERNGRIQELKKLRRHIEEAPNLTDIQFRQFYNCLFTCHLKFGDLDSTSNMVLEMLRKAKEAKNSLAAAKFMIDATEIGHNYSAGLASVQSLSNSKDSDSLKYNKPIRNTVLSYEEFSSDRNFLKLEAESKALLGSLLAKLQMQVVLITTEHGILQPTESIYLKLVKAFLELGKTKDLAEFLIKAEREDSPLSNDSSILVHVINSCISLGWLDQAHDLLDEMRLAGIKTGSSVYASLLKAYCQANRAADVTSLIRDARKAGIQLDSSSYEAMIQSRVLQEDTQGALHLFREMKEAKIPKVGQQDSVMLTKSCSVKDESGLMAKLLQEIKDGQKVDCGVHDWNNVIHFFCKKRLMKDAEKALKNMRSLGHAPNAQTFHSMVTGYAAIGGNYLEVTELWGEMKALASSISMKFDQELLDSVLYTFVRGGFFNRANEVVVMMEKANMFIDKYKYRMLFLKYHKTLYKGKAPKFQTEAQLNKREAALAFKRWVGLS 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3149 767 Pfam PPR repeat 477 502 IPR002885 -
Glsi02g3149 767 Gene3D Tetratricopeptide repeat domain 555 764 IPR011990 GO:0005515
Glsi02g3149 767 Gene3D Tetratricopeptide repeat domain 152 372 IPR011990 GO:0005515
Glsi02g3149 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 612 646 IPR002885 -
Glsi02g3149 767 PANTHER BNAC05G43320D PROTEIN 28 767 - -
Glsi02g3149 767 Pfam PPR repeat family 614 659 IPR002885 -
Glsi02g3149 767 Pfam Pentatricopeptide repeat domain 527 572 IPR002885 -
Glsi02g3149 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Glsi02g3149 767 NCBIfam pentatricopeptide repeat 616 648 IPR002885 -
Glsi02g3149 767 Gene3D Tetratricopeptide repeat domain 374 554 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3149 Glsi-ChrGlsi02 79973982 79976285 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3149 426 665 Miscellaneous Gene Families AT4G11690 24.896 3.48e-14 74.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3149 02 79973982 79976285 Glsi02g3149 02 79973982 79976285 ECH