Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2998 ATGGAGGATTCTGGGAAGCTTAGTAACAGTAAATTCTTGAACCCATGGATGCTTCAGTTCCAGAAGATGGGTCTTGAACTCAAGTGCCCTCTCTGTTTAAACTTGTTCAAAGGGCCGATGTTACTGCCATGCAACCACATATTCTGCAATTCCTGCATAACTGATTGCTCAAGGCCTGGCTCAGAATGTGCTGTCTGTAATATTCAATATGCTCAAAGAGATCTAAGGCCTGTGCCTTTTGTGGAAAACATGGTGGCAATCTATAGAAGCTTGGATGCTGCCTTTTCTGCCAATCTGTTTCAGCAACGTTCTGATGATGCCAAGGTGTTGGAGCAGTGCCAAGCATTGTTTAATTCAACTATTAATAATAAAACAACTGAAGAGCCATTCAGAACTTCCCTATGTGATAATCTATGTAGCAGGCAGTCAATCTTTTCACAAACATCGGATAAACATGCTAAGGTTCCCTTGAGTTTACATCATTCTATAGAAGTTGGGATTGGAAAGAATCAGAAATATGAGAAGAGTAGTGTAGTAGAGCATGGTAAAGCTGAGGAGTTTGACATTTCTTGCAAGGGAAGGGTTGATTTTATTAATCCGGGAAAGCCTAATCTGATGAAATGTTCCCAGCTGGATGGAGGGGGATGTGAAGAGTGTGGAGTTGTGGAAATGGACATTAATCAAGTGACTCAATCATCACCAGACAGCTCGCCATTTTATGATACCAAAGGTTCAGATAATGACTGTAGCGATCAAGACAGTGAACATCTCTTGCCTGCTGAGAGGTTGAAAAGTTCTTCATTGAAAAGAGCAGGCAAAGAAAATGGAAATTTGGAAGAAAGGATGCATTTAAGGTCTGAAAGTTCTGCCTCTGAAACGGAGGGTCTTATGAGAGAGCTCAAGAGGCAAAAAAATCTTTTGCACGGGAATGATGGCATTCAACCCAGTGTAACCCATCATGGTAAGCCTGTGGCTTCCAGCTGTAACCTGGACATTAAATCTGAAGTAGAGCCTAACTCATGTTCAGATACAAGCATCTGTTCTTTTTGCCAATCCTCTAAAACCTCAGAGGTTACTGGGCCAATGTTGCATTATAGAAATGGGAATTTCTTAACAGGAGAAGCAGCACTCCAACCAAATGTGATACATGTGCATAGAATTTGCATTGATTGGGCACCCCAAGTGTATTTTGTTGATGAAGCTGTTAAGAATTTGAAGGCAGAAATAGCAAGGGGAGCAAAGCTAAAATGCAGCAAATGTGGTCTAAAGGGAGCTGCTCTTGGCTGCTATGTCAGATCCTGTAGAAGAACTTATCATGTTCCTTGTGCAATGGAAATCTCAGCTTGCCGTTGGAATGATGAGGATTATCTTATGCTTTGTCCAGCACATTCTCGTGTCAGGTTCCCACGTGAGAAATCCAAGTCTAATAAACAGAACTCCCAGAAGCATCCTGTGCCATCTCATTTGATAACTCAGCGGTCAAACTCCCTAGTGGCTTCACCTGGTGATAGTAAAAGTTTGGTTTTCTGCGGTTCTGCTCTCTCTACTGAAGAAAAGATACTTTTGATCAATTTTGCAACCAAAATTGGTGCAACTGTTACTAAGTTTTGGACCCCGAATGTCACACATGTGATTGCTGCAACTGATGCAAATGGAGCATGCTCCAGGACGCTGAAAGTTCTAATGGGCATTTTAAATGGCCAGTGGATTCTTAAAATGGATTGGATAAAGGTGAGCATGGAAGCAATGCATCGTGTGGAAGAAGAATCATATGAAATTAGTCTTGATAACCATGGGTGTTATGGTGGCCCAAAAGCTGGCAGACTTAGGGCAATGATTAATGAGCCCAAACTATTTAGTGGCTTAAATCTGTACTTTTCTGGTGATTACATGTCGGATTATAAGGAGGATCTTGTAGACTTGGTTGTAGCAGCAGGAGGTACTGTTTTGGGAAGCAAGGAAGAATGGCAAGCAGAAAGTCATGAATGGAAGGAGACTCCTTCAAAGCTGATTGTTTACAATCTTGATCCCCCAACAGGATGTAGGTTGGGGGATGAAGTTTCAATTCTTTGGCAGAGATTAAATGAGGCAGAGGATTTAGCTGCTACCACTGGTTCCCAAGTCATTGGTCATACATGGATTCTGGAGTCAATTGCTGCATGTAAGTTGCAGCCTTTAATCAGCTAG 2187 0.4198 MEDSGKLSNSKFLNPWMLQFQKMGLELKCPLCLNLFKGPMLLPCNHIFCNSCITDCSRPGSECAVCNIQYAQRDLRPVPFVENMVAIYRSLDAAFSANLFQQRSDDAKVLEQCQALFNSTINNKTTEEPFRTSLCDNLCSRQSIFSQTSDKHAKVPLSLHHSIEVGIGKNQKYEKSSVVEHGKAEEFDISCKGRVDFINPGKPNLMKCSQLDGGGCEECGVVEMDINQVTQSSPDSSPFYDTKGSDNDCSDQDSEHLLPAERLKSSSLKRAGKENGNLEERMHLRSESSASETEGLMRELKRQKNLLHGNDGIQPSVTHHGKPVASSCNLDIKSEVEPNSCSDTSICSFCQSSKTSEVTGPMLHYRNGNFLTGEAALQPNVIHVHRICIDWAPQVYFVDEAVKNLKAEIARGAKLKCSKCGLKGAALGCYVRSCRRTYHVPCAMEISACRWNDEDYLMLCPAHSRVRFPREKSKSNKQNSQKHPVPSHLITQRSNSLVASPGDSKSLVFCGSALSTEEKILLINFATKIGATVTKFWTPNVTHVIAATDANGACSRTLKVLMGILNGQWILKMDWIKVSMEAMHRVEEESYEISLDNHGCYGGPKAGRLRAMINEPKLFSGLNLYFSGDYMSDYKEDLVDLVVAAGGTVLGSKEEWQAESHEWKETPSKLIVYNLDPPTGCRLGDEVSILWQRLNEAEDLAATTGSQVIGHTWILESIAACKLQPLIS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2998 728 CDD RING-HC_AtBARD1-like 23 76 - -
Glsi02g2998 728 FunFam Breast cancer associated RING 1 341 466 - -
Glsi02g2998 728 MobiDBLite consensus disorder prediction 246 294 - -
Glsi02g2998 728 ProSiteProfiles BRCT domain profile. 506 593 IPR001357 -
Glsi02g2998 728 Pfam PHD-like zinc-binding domain 385 464 - -
Glsi02g2998 728 SMART BRCT_7 499 583 IPR001357 -
Glsi02g2998 728 SMART BRCT_7 616 721 IPR001357 -
Glsi02g2998 728 FunFam Breast cancer associated RING 1 14 99 - -
Glsi02g2998 728 SMART ring_2 29 66 IPR001841 -
Glsi02g2998 728 Pfam BRCA1 C Terminus (BRCT) domain 507 577 IPR001357 -
Glsi02g2998 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 466 IPR013083 -
Glsi02g2998 728 SMART PHD_3 416 464 IPR001965 -
Glsi02g2998 728 SUPERFAMILY BRCT domain 618 725 IPR036420 -
Glsi02g2998 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 102 IPR013083 -
Glsi02g2998 728 CDD BRCT_Bard1_rpt1 507 586 - -
Glsi02g2998 728 Gene3D BRCT domain 616 721 IPR036420 -
Glsi02g2998 728 ProSiteProfiles Zinc finger RING-type profile. 29 67 IPR001841 -
Glsi02g2998 728 ProSiteProfiles Extended PHD (ePHD) domain profile. 344 464 IPR034732 -
Glsi02g2998 728 SUPERFAMILY RING/U-box 26 89 - -
Glsi02g2998 728 SUPERFAMILY BRCT domain 507 594 IPR036420 -
Glsi02g2998 728 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Glsi02g2998 728 Gene3D BRCT domain 504 609 IPR036420 -
Glsi02g2998 728 MobiDBLite consensus disorder prediction 230 245 - -
Glsi02g2998 728 MobiDBLite consensus disorder prediction 230 294 - -
Glsi02g2998 728 FunFam Breast cancer type 1 susceptibility protein homolog 504 610 - -
Glsi02g2998 728 ProSiteProfiles BRCT domain profile. 614 728 IPR001357 -
Glsi02g2998 728 Pfam RING-type zinc-finger 29 58 IPR027370 -
Glsi02g2998 728 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 242 725 IPR031099 GO:0006281|GO:0006974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2998 Glsi-ChrGlsi02 78695582 78701146 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2998 02 78695582 78701146 Glsi02g2998 02 78695582 78701146 ECH