Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2969 ATGAAAAGGAGTAAATCTGAGACCAAAACAATGGAGGACGAGGCTGATATATACGATGGCGTTAGAGCTCAGTTCCCTGTTACGTTTGGAAAACAATCCAAGTCTCAGACCCCTCTTGAATCCATTCACAATGCCACTCGTCGTTCCACTTCGAATCTCACGTCTAAACCCTCTTCTTCTTCTTCTTCTTCACATTCCTCTACCACAAACACTGACAGCAAAAGTACCAATGACCTCCCTTCTCTTTCCTCCTCTTCCAAGGCTTGGCTTGTTTCCCTCCGCAATTCCAAACAGCCTAACCCTGATTTTACGGCCGATCGTGGTGACGGTGCTTCCACGATCGGACCACCTCGGCCACTGCCACCGGTAGATTCCGATGACGATGGCAGTGTTATGGTGGGACCGCCTCGGCCGCCTGAGGAGAAAGAGGATGGTGGTGTGATTATTGGACCCCCTCGACCTCCTGTTGATTTGGGTTCGGGTGAAGAAGGGGATGAGGACAGTGAGATGATTGGCCCGCCAAGGCCACCCCCTGGTACGAATTTCGGCGCGTCGAGTTCTGAGGATGATTCAGACGGAGACGAGGTGGGGAATCGGTTTCGAATTCCGCTTAGCAACGAGATTGTGCTCAAGGGTCACACTAAGGTTGTGTCAGCCCTTGCTGTGGATCACTCTGGGTCTAGAGTGCTTTCTGGAAGTTATGACTATTCAGTGCGTATGTATGACTTTCAAGGAATGAATTCTCGTTTGCAATCATTTCGACAACTGGAGCCATTTGAAGGTCATCAAGTTCGCAACCTAAGCTGGAGTCCAAGTGCAGATCGCTTTTTGTGTGTGACAGGATCAGCACAAGCAAAGATTTATGACCGTGATGGGCTCACCTTGGGAGAGTTTATGAAGGGGGACATGTATATTCGTGACCTAAAAAATACAAAAGGCCACATATCTGGATTGACATGGGGAGAGTGGCACCCAAAAACTAAGGAAACAATTTTAACGTCATCAGAGGATGGGTCACTGCGAATATGGGATGTAAATGACTTCAAAAGTCAGAAACAGGTAATCAAACCAAAGCTTGCGAGACCTGGAAGAGTTCCTGTTACCACATGTGCATGGGATCATGAAGGTAAATGCATTGCGGGCGGTATAGGAGATGGTTCTATACAGATTTGGAGTATTAAGCCTGGGTGGGGAAGCAGGCCAGATGTACACATTGAAAAAGGTCATTCGGATGATATTACTGGTCTGAGGTTTTCTACTGATGGGAGAATTTTACTGTCAAGAAGCTTTGATGGTTCATTGAAGGTTTGGGATTTGCGCAAAATGAAGGAGCCTCTAAAGGTATTTGAAGATCTCCCAAATCACTATGGACAAACAAATGTTGCCTTTAGTCCTGATGAGCAACTCCTTCTCACTGGAACATCTGTTGAAAGGGAGAGTTCGAGTGGAGGTTTATTGTGCTTTTATGATCGTGTAAACCTTGAGCTTGTTTCAAGAGTTGGCATATCCCCCACTTGTAGTGTTGTGCAGTGTGCTTGGCATCCTAAACTGAATCAGATCTTTGCAACCGTTGGTGATAAAGGCCAAGGAGGGACTCACATACTATATGATCCAACCCTCAGCGAGAGAGGAGCTCTTGTTTGTGTTGCACGTGCACCAAGGAAAAAATCCATGGAAGACTTTGAGGCAAAACCTGTAATTCACAATCCTCATTCCCTGCCACTATTTAGAGATCAACCAAGCCGTAAGCGTCAGCGAGAGAAAATACTAAAGGATCCATTGAAGTCCCATAAGCCTGAACTTCCTATAACAGGACCTGGCTTTGGTGGACGAGTTGGTGTCAGTCAAGGAAGCTTACTGACACAATATCTTCTAAAGCAAGGGGGTATGATTAAGGAGACGTGGATGGAGGAAGATCCAAGAGAAGCTATCCTGAAGTATGCAGATGTTGCAGCAAAGGATCCAAAGTTCATTGCCCCAGCATATGCACAAACTCAGCCTGAACCTGTGTTTCAAAAGTCAGATTCTGATGATGAAGAGAAATAA 2046 0.4619 MKRSKSETKTMEDEADIYDGVRAQFPVTFGKQSKSQTPLESIHNATRRSTSNLTSKPSSSSSSSHSSTTNTDSKSTNDLPSLSSSSKAWLVSLRNSKQPNPDFTADRGDGASTIGPPRPLPPVDSDDDGSVMVGPPRPPEEKEDGGVIIGPPRPPVDLGSGEEGDEDSEMIGPPRPPPGTNFGASSSEDDSDGDEVGNRFRIPLSNEIVLKGHTKVVSALAVDHSGSRVLSGSYDYSVRMYDFQGMNSRLQSFRQLEPFEGHQVRNLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFMKGDMYIRDLKNTKGHISGLTWGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDHEGKCIAGGIGDGSIQIWSIKPGWGSRPDVHIEKGHSDDITGLRFSTDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNHYGQTNVAFSPDEQLLLTGTSVERESSSGGLLCFYDRVNLELVSRVGISPTCSVVQCAWHPKLNQIFATVGDKGQGGTHILYDPTLSERGALVCVARAPRKKSMEDFEAKPVIHNPHSLPLFRDQPSRKRQREKILKDPLKSHKPELPITGPGFGGRVGVSQGSLLTQYLLKQGGMIKETWMEEDPREAILKYADVAAKDPKFIAPAYAQTQPEPVFQKSDSDDEEK 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2969 681 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 346 - -
Glsi02g2969 681 MobiDBLite consensus disorder prediction 1 20 - -
Glsi02g2969 681 SUPERFAMILY WD40 repeat-like 196 528 IPR036322 GO:0005515
Glsi02g2969 681 SMART WD40_4 348 392 IPR001680 GO:0005515
Glsi02g2969 681 SMART WD40_4 203 242 IPR001680 GO:0005515
Glsi02g2969 681 SMART WD40_4 301 344 IPR001680 GO:0005515
Glsi02g2969 681 SMART WD40_4 252 289 IPR001680 GO:0005515
Glsi02g2969 681 SMART WD40_4 442 490 IPR001680 GO:0005515
Glsi02g2969 681 SMART WD40_4 399 438 IPR001680 GO:0005515
Glsi02g2969 681 SMART WD40_4 493 537 IPR001680 GO:0005515
Glsi02g2969 681 MobiDBLite consensus disorder prediction 29 198 - -
Glsi02g2969 681 MobiDBLite consensus disorder prediction 29 102 - -
Glsi02g2969 681 CDD WD40 209 527 - -
Glsi02g2969 681 FunFam Nucleotide binding protein 151 298 - -
Glsi02g2969 681 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Glsi02g2969 681 Gene3D - 179 297 IPR015943 GO:0005515
Glsi02g2969 681 Gene3D - 298 538 IPR015943 GO:0005515
Glsi02g2969 681 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Glsi02g2969 681 MobiDBLite consensus disorder prediction 661 681 - -
Glsi02g2969 681 MobiDBLite consensus disorder prediction 1 19 - -
Glsi02g2969 681 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 244 - -
Glsi02g2969 681 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Glsi02g2969 681 PRINTS G protein beta WD-40 repeat signature 425 439 IPR020472 -
Glsi02g2969 681 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Glsi02g2969 681 Pfam WD domain, G-beta repeat 404 438 IPR001680 GO:0005515
Glsi02g2969 681 Pfam WD domain, G-beta repeat 208 242 IPR001680 GO:0005515
Glsi02g2969 681 Pfam WD domain, G-beta repeat 366 392 IPR001680 GO:0005515
Glsi02g2969 681 Pfam WD domain, G-beta repeat 309 344 IPR001680 GO:0005515
Glsi02g2969 681 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 447 IPR001680 GO:0005515
Glsi02g2969 681 FunFam WD repeat-containing protein 70 299 541 - -
Glsi02g2969 681 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 10 680 - -
Glsi02g2969 681 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 440 - -
Glsi02g2969 681 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 353 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2969 331 505 Miscellaneous Gene Families AT5G08390 26.136 4.24e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2969 02 78471305 78477847 Glsi02g2969 02 78471305 78477847 ECH